Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4810g00004 ATGATGATCCTGGGAAAGATATTCCTCATACTCTTATTGTTATCTTCAGTTTTCTCAATAGCCTCATCAAGAAGAGGACATTCATCAAGCAACATAGATTGGTGGTGCAACCTAACCCCACACCCTAAGCCATGCAAATACTACATTGGTCAAATGAATCACCATTTCACAATCAAACACAGAACTGAACTCAGGGGAATGCTTGTTCAACTGGCCTTAAAGCAAGCTCTTATCATGCAAAAGGAAGCACATGATTTTGAACAAAACATGGAGACAAAGAAGCATAGAACTGTTCATGGTGATTGTTTAAAGCTCTATGAAAACACCATCTTCCATCTCAACCGTACCCTCGAAGGCTTGCATGATCTGAAGAGAAGCTGTTCCCCTGTTGATGCACAAACATGGCTAAGCACTGCTCTTACAAACATTCAAACGTGTCGAACCGGGGCTGAAGAACTCAGTGTTCAAGAATTCATGGTGTCAAATGTGAGAACCAATGTCACAGAGATGATAAGGAATAGCTTAGCAATCAACATGGATTTCCTGAAGGAAAATTCACATAATAAGCACACAGAAACAACAGAAGAAGCATTTCCAAGTTGGTTTTCAACTCATGAGAGGAAATTGTTGCAGTCTTCAACTATAAAGGCAAATCTTGTGGTAGCAAAAGATGGTTCAGGAAATTTTAGGAGTGTCCAAGAGGCTCTTAATGCAGCTGCAAAGAGAAGAAACAAGATAAGGTTTGTGATACATGTGAAGAAAGGTGTGTATAGAGAGAATATTGAGGTTGCAGTGAACAATGATAACATCATGTTGATTGGTGATGGGATGAGAAATACCATAATAACAAGTAGCAGAAGTGTTCAAGGAGGTTTTACAACTTATAGTTCTGCAACAGCAGGCATAGATGGCCTTCACTTCATAGCAAGAGACATTACATTCCAAAATGCCGCCGGTGCTCAAAAGGGTCAAGCCGTGGCGCTCCGGTCTTCCTCCGACCTCTCCGTCTTCTACCGGTGCATGATAACAGGTTACCAAGACACCCTCATGGTTCAAGCACAACGTCAATTTTACAGACAATGCTACATCTATGGCACCATAGACTTCATCTTTGGTAACGCAGCAGTGGTGTTTCAAAATTGTAACATTTATGCAAGAAAGCCTATAGAGGGCCAAGCAATCATGATCACGGCCCAAGGTAGAGGTGACCCATTTCAAAACACTGGAATCTCAATCCACAATTGTCAAATCATGGCTGCGCCAGATCTTAAGCCCGTTGTTGACAAATACAACACTTTCTTGGGCAGGCCTTGGCAGCAATATGCTAGAGTAGTGGTTATGAAAACTTTCATCGACAAGTTGGTGAGCCCATTGGGTTGGTCTCAATGGGATGGTACTAATTTTGCTTTGGATACACTTTATTATGGAGAGTATGAGAATTATGGGCCTGGTTCAAATACAGCCAATAGAGTAAAATGGTCAGGTTTTCATGTCATAACAAGCCCAGTTGTTGCATCGCAGTTTACAGTTAATGGCCTTCTTTTTGGCACTACATGGTTGCCTACCACATCTGTGCCATTTACCTCAGGCCTTTGA 1596 0.4173 MMILGKIFLILLLLSSVFSIASSRRGHSSSNIDWWCNLTPHPKPCKYYIGQMNHHFTIKHRTELRGMLVQLALKQALIMQKEAHDFEQNMETKKHRTVHGDCLKLYENTIFHLNRTLEGLHDLKRSCSPVDAQTWLSTALTNIQTCRTGAEELSVQEFMVSNVRTNVTEMIRNSLAINMDFLKENSHNKHTETTEEAFPSWFSTHERKLLQSSTIKANLVVAKDGSGNFRSVQEALNAAAKRRNKIRFVIHVKKGVYRENIEVAVNNDNIMLIGDGMRNTIITSSRSVQGGFTTYSSATAGIDGLHFIARDITFQNAAGAQKGQAVALRSSSDLSVFYRCMITGYQDTLMVQAQRQFYRQCYIYGTIDFIFGNAAVVFQNCNIYARKPIEGQAIMITAQGRGDPFQNTGISIHNCQIMAAPDLKPVVDKYNTFLGRPWQQYARVVVMKTFIDKLVSPLGWSQWDGTNFALDTLYYGEYENYGPGSNTANRVKWSGFHVITSPVVASQFTVNGLLFGTTWLPTTSVPFTSGL 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4810g00004 531 Pfam Plant invertase/pectin methylesterase inhibitor 31 177 IPR006501 GO:0004857
Gabi4810g00004 531 CDD PMEI-like_3 34 178 - -
Gabi4810g00004 531 SUPERFAMILY Pectin lyase-like 213 530 IPR011050 -
Gabi4810g00004 531 ProSitePatterns Pectinesterase signature 2. 363 372 IPR033131 -
Gabi4810g00004 531 PANTHER PECTINESTERASE 12 522 - -
Gabi4810g00004 531 Gene3D - 211 531 IPR012334 -
Gabi4810g00004 531 SMART PMEI_2 27 177 IPR006501 GO:0004857
Gabi4810g00004 531 Gene3D Invertase/pectin methylesterase inhibitor family protein 27 181 IPR035513 -
Gabi4810g00004 531 FunFam Pectinesterase 212 531 - -
Gabi4810g00004 531 NCBIfam pectinesterase inhibitor domain 7 178 IPR006501 GO:0004857
Gabi4810g00004 531 ProSitePatterns Pectinesterase signature 1. 244 263 IPR018040 -
Gabi4810g00004 531 Pfam Pectinesterase 218 514 IPR000070 GO:0030599|GO:0042545
Gabi4810g00004 531 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 30 178 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4810g00004 Gabi-Chr4810 109329 112350 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4810g00004 26 531 Carbohydrate Esterase AT3G47400 55.985 0.0 593
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4810g00004 K01051 - gmx:100806133 786.949