Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi480g00020 ATGGAAGTTGTGTCCGTGTCTAAATGTCAAGTCTTTTCCTTTATGAAACCAAAGAGAACCCAAATTCAGGAACTTCCAATAAACACTAGAGTACCCAACAAAAGGAACCATTCCAATCTTTCTTCTTCTTCGATTTCATGTAATTGGTCGTTTACTAGGAAAGCAGCAACAACATACCCTTCCTTCACAACTTCCACAACACAGAAACACCATTGGATGGTGCTCATGGACAGCCCTCCTCATGGGGTCAATTCCAAGCCACAAGTCATTGATTATTATGTCAAGACTCTACAGACAGTTCTGGGCAGTGAGAAAGATGCTCAAATGTGTATATATGATGCTTCCTGGGATACACACTACGGTTTTTGTTGTGACATTGATGAAGAAATATCATCCCAGCTGGCCAGTTTACCTGGGGTCTTATTGGTTAGGCCTGATCCGGATATCAACTCTTTGAAAAAGGACTATAGTTTATCAAGTGACCAGGCAGGCCACCCGTCAAGATCACAAACTAGAAGCAATATGTTATTCCCTGCTGGAAATTCAAAATATTGGCTTGTTAGAATGGATAAACCTGGGGTTGGGGTGGTTACCAAGGCTCAGATTGTCGATTACTATGCTCAAATTTTGACCAAAGTCATGGGAAATGAGAAGGATGCACAAATGTGTATATATCATGTTTCCTGGAAAAACAACTTCGGGTTTTGTTGTGAACTTGATGAGGATTGTGCACAAGAGCTGGCTGGTGTACCTGGTGTCTTATCAGTTCACCCAGATAGCAATTTTGAGTCTGAAAATAAGGATTATGAAGGTAGTAACTTAGAAAATAGTTTGAAAATTCCAAACTCTTCTGAAGCAAGTCAGGAAGCTTCTGTGGAAACAAAGAAACTTTTTATAACAGGTATGCTCCTGACATTGATTCCAGGGCTGTCATTTTATACATCTGAGAAAACCTTACGTGCAGCATTTGAAGGCTTTGGTGAGCTTGTTGAAGTTAAAGTTATTATGGACAAAATTTCAAAAAGGTCCAAGGGTTATGCATTTGTTGAATACACCACAGAGGAGGCTGCAAGTGCAGCACTGAAAGAGATGAATGGCAAGATTATCAATGGCTGGATGATAGTGGTAGATGTTGCCAAGACTAGCCCACCAAGATACAACAGGGGTCGTGCCAGATCATCAGCTTGA 1188 0.4082 MEVVSVSKCQVFSFMKPKRTQIQELPINTRVPNKRNHSNLSSSSISCNWSFTRKAATTYPSFTTSTTQKHHWMVLMDSPPHGVNSKPQVIDYYVKTLQTVLGSEKDAQMCIYDASWDTHYGFCCDIDEEISSQLASLPGVLLVRPDPDINSLKKDYSLSSDQAGHPSRSQTRSNMLFPAGNSKYWLVRMDKPGVGVVTKAQIVDYYAQILTKVMGNEKDAQMCIYHVSWKNNFGFCCELDEDCAQELAGVPGVLSVHPDSNFESENKDYEGSNLENSLKIPNSSEASQEASVETKKLFITGMLLTLIPGLSFYTSEKTLRAAFEGFGELVEVKVIMDKISKRSKGYAFVEYTTEEAASAALKEMNGKIINGWMIVVDVAKTSPPRYNRGRARSSA 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi480g00020 395 Gene3D - 264 395 IPR012677 -
Gabi480g00020 395 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 55 150 IPR037045 -
Gabi480g00020 395 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 172 263 IPR037045 -
Gabi480g00020 395 FunFam Organelle RRM domain-containing protein 1, chloroplastic 173 262 - -
Gabi480g00020 395 SUPERFAMILY RNA-binding domain, RBD 307 392 IPR035979 GO:0003676
Gabi480g00020 395 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 309 371 IPR000504 GO:0003723
Gabi480g00020 395 SMART rrm1_1 296 377 IPR000504 GO:0003723
Gabi480g00020 395 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 295 381 IPR000504 GO:0003723
Gabi480g00020 395 PANTHER MULTIPLE ORGANELLAR RNA EDITING FACTOR 2, CHLOROPLASTIC-RELATED-RELATED 165 372 IPR039206 GO:0016554
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi480g00020 Gabi-Chr480 98148 103216 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi480g00020 306 385 C2H2 Transcription Factor Family AT2G19380 35.000 1.77e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi480g00020 - - vun:114191397 621.698