Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi480g00018 ATGGAAGTTGTGTCCGTGTCTAAATGTCAAGTCTTTTCCTTTATGAAACCAAAGAGAACCCAAATTCAGGAACTTCCAATAAACACTAGAGTACCCAACAAAAGGAACCATTCCAATCTTTCTTCTTCTTCGATTTCATGTAATTGGTCGTTTACTAGGAAAGCAGCAACAACATACCCTTCCTTCACAACTTCCACAACACAGAAACACCATTGGATGGTGCTCATGGACAGCCCTCCTCATGGGGTCAATTCCAAGCCACAAGTCATTGATTATTATGTCAAGACTCTACAGACAGTTCTGGGCAGTGAGAAAGATGCTCAAATGTGTATATATGATGCTTCCTGGGATACACACTACGGTTTTTGTTGTGACATTGATGAAGAAATATCATCCCAGCTGGCCAGTTTACCTGGGGTCTTATTGGTTAGGCCTGATCCGGATATCAACTCTTTGAAAAAGGACTATAGTTTATCAAGTGACCAGGCAGGCCACCCGTCAAGATCACAAACTAGAAGCAATATGTTATTCCCTGCTGGAAATTCAAAATATTGGCTTGTTAGAATGGATAAACCTGGGGTTGGGGTGGTTACCAAGGCTCAGATTGTCGATTACTATGCTCAAATTTTGACCAAAGTCATGGGAAATGAGAAGGATGCACAAATGTGTATATATCATGTTTCCTGGAAAAACAACTTCGGGTTTTGTTGTGAACTTGATGAGGATTGTGCACAAGAGCTGGCTGGTGTACCTGGTGTCTTATCAGTTCACCCAGATAGCAATTTTGAGTCTGAAAATAAGGATTATGAAGGTAGTAACTTAGAAAATAGTTTGAAAATTCCAAACTCTTCTGAAGCAAGTCAGGAAGCTTCTGTGGAAACAAAGAAACTTTTTATAACAGGGCTGTCATTTTATACATCTGAGAAAACCTTACGTGCAGCATTTGAAGGCTTTGGTGAGCTTGTTGAAGTTAAAGTTATTATGGACAAAATTTCAAAAAGGTCCAAGGGTTATGCATTTGTTGAATACACCACAGAGGAGGCTGCAAGTGCAGCACTGAAAGAGATGAATGGCAAGATTATCAATGGCTGGATGATAGTGGTAGATGTTGCCAAGACTAGCCCACCAAGATACAACAGGGGTCGTGCCAGATCATCAGCTTGA 1164 0.4072 MEVVSVSKCQVFSFMKPKRTQIQELPINTRVPNKRNHSNLSSSSISCNWSFTRKAATTYPSFTTSTTQKHHWMVLMDSPPHGVNSKPQVIDYYVKTLQTVLGSEKDAQMCIYDASWDTHYGFCCDIDEEISSQLASLPGVLLVRPDPDINSLKKDYSLSSDQAGHPSRSQTRSNMLFPAGNSKYWLVRMDKPGVGVVTKAQIVDYYAQILTKVMGNEKDAQMCIYHVSWKNNFGFCCELDEDCAQELAGVPGVLSVHPDSNFESENKDYEGSNLENSLKIPNSSEASQEASVETKKLFITGLSFYTSEKTLRAAFEGFGELVEVKVIMDKISKRSKGYAFVEYTTEEAASAALKEMNGKIINGWMIVVDVAKTSPPRYNRGRARSSA 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi480g00018 387 Gene3D - 264 387 IPR012677 -
Gabi480g00018 387 SUPERFAMILY RNA-binding domain, RBD 282 384 IPR035979 GO:0003676
Gabi480g00018 387 FunFam Organelle RRM domain-containing protein 1, chloroplastic 173 262 - -
Gabi480g00018 387 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 297 363 IPR000504 GO:0003723
Gabi480g00018 387 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 172 263 IPR037045 -
Gabi480g00018 387 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 55 150 IPR037045 -
Gabi480g00018 387 SMART rrm1_1 296 369 IPR000504 GO:0003723
Gabi480g00018 387 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 295 373 IPR000504 GO:0003723
Gabi480g00018 387 PANTHER MULTIPLE ORGANELLAR RNA EDITING FACTOR 2, CHLOROPLASTIC-RELATED-RELATED 165 364 IPR039206 GO:0016554
Gabi480g00018 387 FunFam Organelle RRM domain-containing protein 1, chloroplastic 263 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi480g00018 Gabi-Chr480 98148 103216 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi480g00018 287 377 C2H2 Transcription Factor Family AT2G19380 32.967 3.98e-12 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi480g00018 - - vun:114191397 629.017