Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi480g00004 ATGGAGGAAGAGTTGGATGCAGATGATGTAGTGAGGTCAGTGATGAGCAGCATGAGGATGAACAATGGATCTTCAAGCAGAAGGAGTTTGTGGAGTGGACATGGTGATGATGTATTTGAGAGGAGCAATAGGGAAGATGATGAGGAACACCTCAAGTGGGCTGCTATACAGAGGCTTCCCACTTTTGAAAGGCTGAGGAAAACCATAGTCAAACAAGTTTTAGAGAGTGGAAGATTCAACTATGAGGAGATTGACATATCCAAGCTTGGTATGCTAGAAAAGAAGAAACTCCTTGATGGTGTACTAAGGACTGTTGAAGAAGACAATGAGAAGTTCCTCACTAAGATGAGGGAGAGGATTGATAGGGTGGCTGTAGAGATTCCAAAGGTTGAAGTACGATTTGAACATTTGTATGTTGAAGGGGATGCATATATTGGAACCAGAGCACTGCCAACACTAGTGAATTCCACCATGAATGCCATAGAGAGAGTTCTTGGATCAATCAAACTTCTCCCCTCAAAGAAAAGTGTTGTCAACATACTTCAAGATGTTAGTGGAATCGTCAAGCCATCAAGAATGACCTTACTTTTGGGGCCTCCGGGATCAGGAAAAACTACACTGCTGCAGGCACTTGCTGGGAAACTGGACAGGGATTTAAGGGTATCAGGAAGAGTCACTTACTGTGGTCATGAGTTATCAGAGTTTGTTCCTCAAAGAACATGTGCTTATATTAGTCAGCATAATCTTCATCATGGAGAGATGTCAGTCAGAGAGACACTGGACTTTTCTGGACGTTGCTTGGGAGTTGGAACAAGGCATGACCTACTAGTGGAATTGACAAGGCGAGAAAAGCAAGAAGGAACCAAACCAGATCCAGAGATAGATGCTTTCATGAAAGCCACTGCAATGGAAGATCAAGAAACAAGTCTCATTACAGATTATGTTCTCAAGATTCTTGGATTGGAAATATGTGCTGATACTTTGGTAGGAGATGAGATGAGAAGGGGAATATCTGGTGGAGAAAAAAAGCGGTTAACCATTGGTGAGATGTTGGTAGGACCTGCAAAAGTTTTCTTAATGGATGAGATTTCAACTGGTTTGGATAGTTCCACAACCTTCCAAATTGTTAGGTTCTTGAGGCAGCTAGTTCATATCATGGATGTTACAATGATAATCTCTCTATTACAACCTGCTCCAGAAACATTTGAACTTTTTGATGACATAATCTTACTTTCAGAAGGTCAGATTGTGTACCAAGGTCCACGTGAGAATGTTCTCAATTTTTTTGAGAGTGTGGGGTTCAAATGCCCAGAAAGGAAAGGAGTTGCAGACTTTCTACAGGAGGTTACTTCCAGAAAGGACCAAGAGCAGTACTGGTTAACAAGGGACAAACCTTACCATTATATCAGTGTGCCTGAGTTTGTAGCCCACTTCAATAACTATGACATTGGCCAACAACTTTGTGAAGAGCTTCAGGTTCCTTTTGACCGTACTAAAACTCATCCTGCTGCATTGGTTAAAGATAAATATGGAATTTCAAAACTAGAACTCTTCAAGGCATGCTTTGCAAGAGAGTGGCTACTGATGAAGCGCAGCGCTTTTATATATATATTTAAGACTACTCAGATTATAATAATGTCTTTGATTACTATGACAGTGTTTCTTAGGACAGAAATGAAACATGGCCAACTTGAGGATGGGAGAAAATTTTATGGTGCACTATTCTTCAGTCTCATCAATGTAATGTTCAATGGAATGGCTGAGCTTGCAATGACTGTTTTTAGACTTCCTGTTTTCTTCAAGCAGAGAGACCTATTATTTTATCCGGCATGGGCTTTTGCACTTCCCATATGGATCTTTCGAATCCCTCTCTCTTTGTTGGAGTCAGGATTATGGGTTGTCCTTACTTATTACACTGTAGGGTTTGCTCCAGCTGCAAGTAGATTTTTTCGTCAGTTATTAGCATTCTTCTGCGTTCATCAAATGGGGCTGACTCTATTCCGATTCATTGCTGGTCTTGGAAGAACAGTGATTGTGGCAAGTACAATTGGTACCTTTATACTGCTACTTGTTTTTATACTTGGAGGGTTCGTTATCGCCAGAGATGACATTGAACCGTGGATGATATGGGGCTATTATGCTTCTCCTATGATGTATGGTCAGAATGCAATTGTCATCAATGAATTCCTTGACAAGAGATGGAGTCCCAATATGGACCCAAGAATTCCTGAGCCCACAGTTGGGAAGGCTCTTCTCAGGGCTAGAGGCATGTTTACAGAAGACTATTGGTACTGGATTTGTATTGGTGCTCTCCTAGGATTTTCTCTGTTTTTCAACATTTGTTTTATTGTTGCTCTGACATTTCTGAATCCATTTGGAGATTCTAAATCTATTGTTGTGGAGGAGGAAAACAAGAAAACGGAAGCTACAGAAGAGAGTTCTACTTCAACTGCTAAATCATTTGAACTCTTTGATATGGCAGAAAGAAACACCTCAGAGAGTTCAATTCCCAAAGCAGACACTACAACCACCAAGAGCGGAATGGTGTTACCCTTTAGGCCCCTATCACTTGCTTTTGATCACGTGAATTACTACATCAACATGCCAACTGAAATGAAGAAACAAGGAGTTGAAGAGAGTCGCCTCCAATTACTAAGAGATGTCAGTGGTGCTTTCAGGCCTGGAGTACTTACAGCATTAGTAGGTGTAACAGGTGCTGGAAAAACCACCTTGATGGATGTTCTTGCTGGAAGAAAAACTGGTGGTTATATTGAAGGCAGCATCAGCTTATCTGGTTTCCCAAAGAAACAAGAAACTTTTGCTAGGATTAGTGGATATTGTGAACAAAATGATATCCATTCTCCAAATGTGACAGTCTATGAATCTATTGTGTTTTCTGCTTGGCTGCGTCTTGGTAAGGAGGTCAAGAGAGAAAGACAGAAGATGTTCATTGAGGAAGTTATGAAACTTGTTGAACTACATCCAGTGAGAAATTTTCTAGTAGGCCTTCCTGGCATAGATGGTTTATCAACTGAACAAAGGAAAAGACTCACCATTGCTGTAGAATTGGTTGCCAATCCTTCTATCATCTTTATGGACGAGCCGACCTCAGGCCTTGATGCTAGAGCTGCAGCAGTTGTTATGCGTACTGTCAGAAATACAGTGGATACAGGGAGAACTGTAGTCTGCACAATTCATCAACCAAGCATTGACATATTTGAATCTTTTGATGAGTTGCTTTTGATGAAGAGAGGAGGACAAATCATATATAGTGGTCCCCTTGGTCAACATTCTCAGAAGCTTATAGAGTACTTTGAGGCTATTCCAGGAGTTCCGAGAATCAAAGATGGATATAATCCTGCCACATGGATGTTGGAGATCAGTTCTCCAGCAGTTGAGTCTCAGCTTAGTGTAGACTTTGCAGAATTGTACACTAAGTCAGAATTGTACCAGAGGAATCAAGAACTTATTAAAGAGCTAAGCACACCATTACAGGGAACCAAGGACCTTAATTTCGCTACTCAATACTCCCAGTCCTTCATTACTCAATGTAAAGCTTGCTTCTGGAAACAGCGATCATCCTACTGGAAGAACCCACAGTATAATGCCATCCGTTTCTTCTTATCAATATCTGCAGGCGTTATTTTTGGACTCATTTTCTGGAAAAAAGGAGATAAAATACAAACGGAACAAGAACTTATGAATCTAATGGGAGCTATGTATACTGCTATTTTCTTTGTTGGATCCCTCAACACTAACTCTGTTCAACCGGTAGTTGCAATAGAAAGAATGGTCTACTACCGTGAAAAAGCGGCTGGAATGTACTCAGCTCTCCCTTATGCATTAGCTCAGGTAGCAATAGAATGTATTTATGTTGCAATCCAAACATTGGCCTTTAGTCTTATCCTTTACTCAATGATTGGGTTCCTCTGGCAAGTTGACAAGTTCTTCTGGTTCTACTACTTCATATGCATGTCCTTCATCTACTTCACACTTTACGGAATGATGACTGTGGCGCTGACACCAAATCACCAAATTGCTGCAATTGTTATGTCCTTCTTTTTAGTGTTGTGGAACATATTCTCTGGTTTCCTTATTCCAAAATCGCAAATTCCAATATGGTGGAGGTGGTATTACTGGGCGTGCCCAACTTCTTGGACTATATATGGTCTATTGACATCCCAGATGGGTGACAATGATACTCCAATTGAGGTACCTGGATCTGGAACAATATCACTAAAAGCATACCTTGAGAAACAGATGGACTATAAATATAGCTTCCTTGGAGTTGCTGCAGTGGCTCAAATTGCTTTTGCTGCACTGTTTCTTTTTGTATTTGCATACGGTATCAAGTTCCTTAATTTCCAGAAGAGATAA 4377 0.4071 MEEELDADDVVRSVMSSMRMNNGSSSRRSLWSGHGDDVFERSNREDDEEHLKWAAIQRLPTFERLRKTIVKQVLESGRFNYEEIDISKLGMLEKKKLLDGVLRTVEEDNEKFLTKMRERIDRVAVEIPKVEVRFEHLYVEGDAYIGTRALPTLVNSTMNAIERVLGSIKLLPSKKSVVNILQDVSGIVKPSRMTLLLGPPGSGKTTLLQALAGKLDRDLRVSGRVTYCGHELSEFVPQRTCAYISQHNLHHGEMSVRETLDFSGRCLGVGTRHDLLVELTRREKQEGTKPDPEIDAFMKATAMEDQETSLITDYVLKILGLEICADTLVGDEMRRGISGGEKKRLTIGEMLVGPAKVFLMDEISTGLDSSTTFQIVRFLRQLVHIMDVTMIISLLQPAPETFELFDDIILLSEGQIVYQGPRENVLNFFESVGFKCPERKGVADFLQEVTSRKDQEQYWLTRDKPYHYISVPEFVAHFNNYDIGQQLCEELQVPFDRTKTHPAALVKDKYGISKLELFKACFAREWLLMKRSAFIYIFKTTQIIIMSLITMTVFLRTEMKHGQLEDGRKFYGALFFSLINVMFNGMAELAMTVFRLPVFFKQRDLLFYPAWAFALPIWIFRIPLSLLESGLWVVLTYYTVGFAPAASRFFRQLLAFFCVHQMGLTLFRFIAGLGRTVIVASTIGTFILLLVFILGGFVIARDDIEPWMIWGYYASPMMYGQNAIVINEFLDKRWSPNMDPRIPEPTVGKALLRARGMFTEDYWYWICIGALLGFSLFFNICFIVALTFLNPFGDSKSIVVEEENKKTEATEESSTSTAKSFELFDMAERNTSESSIPKADTTTTKSGMVLPFRPLSLAFDHVNYYINMPTEMKKQGVEESRLQLLRDVSGAFRPGVLTALVGVTGAGKTTLMDVLAGRKTGGYIEGSISLSGFPKKQETFARISGYCEQNDIHSPNVTVYESIVFSAWLRLGKEVKRERQKMFIEEVMKLVELHPVRNFLVGLPGIDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELLLMKRGGQIIYSGPLGQHSQKLIEYFEAIPGVPRIKDGYNPATWMLEISSPAVESQLSVDFAELYTKSELYQRNQELIKELSTPLQGTKDLNFATQYSQSFITQCKACFWKQRSSYWKNPQYNAIRFFLSISAGVIFGLIFWKKGDKIQTEQELMNLMGAMYTAIFFVGSLNTNSVQPVVAIERMVYYREKAAGMYSALPYALAQVAIECIYVAIQTLAFSLILYSMIGFLWQVDKFFWFYYFICMSFIYFTLYGMMTVALTPNHQIAAIVMSFFLVLWNIFSGFLIPKSQIPIWWRWYYWACPTSWTIYGLLTSQMGDNDTPIEVPGSGTISLKAYLEKQMDYKYSFLGVAAVAQIAFAALFLFVFAYGIKFLNFQKR 1458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi480g00004 1458 Gene3D - 167 469 IPR027417 -
Gabi480g00004 1458 ProSitePatterns ABC transporters family signature. 337 351 IPR017871 GO:0005524|GO:0016887
Gabi480g00004 1458 Pfam ABC transporter 885 1037 IPR003439 GO:0005524
Gabi480g00004 1458 Pfam ABC-2 type transporter 1066 1137 IPR043926 GO:0140359
Gabi480g00004 1458 Pfam ABC-2 type transporter 396 448 IPR043926 GO:0140359
Gabi480g00004 1458 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 165 438 IPR003439 GO:0005524
Gabi480g00004 1458 Pfam ABC transporter 181 363 IPR003439 GO:0005524
Gabi480g00004 1458 FunFam ABC transporter G family member 34 168 472 - -
Gabi480g00004 1458 CDD ABCG_PDR_domain2 854 1092 IPR034003 -
Gabi480g00004 1458 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 857 1110 IPR003439 GO:0005524
Gabi480g00004 1458 SMART AAA_5 190 415 IPR003593 GO:0016887
Gabi480g00004 1458 SMART AAA_5 894 1086 IPR003593 GO:0016887
Gabi480g00004 1458 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 179 438 IPR027417 -
Gabi480g00004 1458 Pfam ABC-2 type transporter 517 729 IPR013525 GO:0016020|GO:0140359
Gabi480g00004 1458 Pfam ABC-2 type transporter 1182 1395 IPR013525 GO:0016020|GO:0140359
Gabi480g00004 1458 Pfam Plant PDR ABC transporter associated 739 799 IPR013581 -
Gabi480g00004 1458 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 881 1097 IPR027417 -
Gabi480g00004 1458 FunFam ABC transporter G family member 40 871 1101 - -
Gabi480g00004 1458 Pfam ABC-transporter N-terminal 105 155 IPR029481 -
Gabi480g00004 1458 Gene3D - 871 1107 IPR027417 -
Gabi480g00004 1458 PANTHER PLEIOTROPIC DRUG RESISTANCE PROTEIN 1-LIKE ISOFORM X1 16 1458 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi480g00004 Gabi-Chr480 11682 26992 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi480g00004 882 1069 Calmodulin-binding Proteins AT2G36910 27.094 2.78e-07 53.5