Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4808g00001 ATGGGGAGGAAGAACAAGATTGAAGATGATTATGTTACTGGGGTGAGGATCGGGCAAGGAAAGTATGGATCTGTTTTGTTGTGTAGGTCTCTTGTTGGCGGCGCGGAGTATGCGTGTAAGACTATGAAGAAGGGGGATGAGACTGTTTACAGGGAGGTGGAGATAATGCAGCACTTGTCTGGGCATCCTAGGGTTGTGACTCATCTGGCAGTGTATGAGGAAGCTGATTGCTCTCATCTGGTGATGGAATTGTGCTCTGGGGGAAGACTTCTCGACCAGATGTTTAGGGAGGGCCCTTGTTCTGAACAGCGGGCTGCTAATATACTTAAGGAAGTGATGTTGGTCATCAAGTATTGTCATGATATGGGAGTTGTGCACAGAGATATCAAGCCTGAGAATATTCTGCTTACTGCTTCGGGGGAAATAAAGCTTGCTGATTTTGGCCTGGCCATGAGAATTTCTAAGGGTCAGAACTTGACGGGTTTGGTTGGGAGCCCTGCATATGTTGCACCAGAAGTGTTGTTGGGTAGATACTCAGAAAAGGCGGATATATGGAGTGCTGGAGTGCTCCTGCATGCTCTGTTGGTTGGTGTTCTTCCATTTAAAGGGGATTCACAAGAAGCAGTTTTTGAGGCTATTAAGAATTCCAAGCTAGAGTTCCAAACCGGGATGTGGGAATCAATATCTAAACCTGCACGAGATCTTGTTGGGAGAATGCTGACAAGGGATATTTCAGCAAGGATAACAGCTGATGAAGTACTTAGACATCCATGGATATCTTTCTACACAGAACGTACATTGAAGATCCTGCCCGTTGAATCAAAGTTGAAGCACCAAAATGGAGCTGCTTGCCACAACTTTGTTGCTGCACCTGAACCTAGGTTAGGAAGAAACAGGATGGATGATGGGTTCCTTAATGAGGTTTCAAGCCTTTCTTCATCATCTGAAAGTTGCAATTCAGAATATCATGATGTTTGTGTGTGGATTGATGCACTTGCCAATGCAATTTCACATGTAAGGATATCTGAACCAAAGAGGAGCAAGTTGTGGGCAGTTCCAATTCATCAGCAAGGTTTATGA 1080 0.4481 MGRKNKIEDDYVTGVRIGQGKYGSVLLCRSLVGGAEYACKTMKKGDETVYREVEIMQHLSGHPRVVTHLAVYEEADCSHLVMELCSGGRLLDQMFREGPCSEQRAANILKEVMLVIKYCHDMGVVHRDIKPENILLTASGEIKLADFGLAMRISKGQNLTGLVGSPAYVAPEVLLGRYSEKADIWSAGVLLHALLVGVLPFKGDSQEAVFEAIKNSKLEFQTGMWESISKPARDLVGRMLTRDISARITADEVLRHPWISFYTERTLKILPVESKLKHQNGAACHNFVAAPEPRLGRNRMDDGFLNEVSSLSSSSESCNSEYHDVCVWIDALANAISHVRISEPKRSKLWAVPIHQQGL 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4808g00001 359 CDD STKc_CAMK 10 258 - -
Gabi4808g00001 359 ProSitePatterns Protein kinases ATP-binding region signature. 17 40 IPR017441 GO:0005524
Gabi4808g00001 359 SMART serkin_6 11 259 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4808g00001 359 ProSiteProfiles Protein kinase domain profile. 11 259 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4808g00001 359 Gene3D Transferase(Phosphotransferase) domain 1 3 297 - -
Gabi4808g00001 359 Pfam Protein kinase domain 12 259 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4808g00001 359 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Gabi4808g00001 359 PANTHER SERINE/THREONINE-PROTEIN KINASE 3 284 - -
Gabi4808g00001 359 FunFam Maternal embryonic leucine zipper kinase 3 281 - -
Gabi4808g00001 359 SUPERFAMILY Protein kinase-like (PK-like) 7 296 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4808g00001 Gabi-Chr4808 9141 11128 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4808g00001 1 259 EF-hand Containing Proteins AT4G35310 44.444 7.62e-78 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Gabi4808g00001 Pkinase 7.6e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4808g00001 - - gmx:100812729 540.421