Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi47g00027 ATGAATGGGGTCACACTCCTTGAACCAGATGACTCTGAGTTTGTTGAAGTTGATCCAACTGGCAGATATGGCAGATACAATGAAATCCTTGGCAAAGGAGCTTCAAAGACAGTATATAGAGCATTCGATGAGTATCAAGGGATTGAAGTTGCTTGGAACCAGGTCAAGCTCTATGATTTTCTACAAAGCCCTGAAGATCTTGAGAGGCTTTACTGTGAAATTCATCTCCTGAAAACATTGAAGCACAGAAACATTATGAAATTTTACACCTCTTGGGTAGATACTGCAAATAGGAATATCAACTTCGTGACTGAAATGTTCACATCTGGTACACTTAGACAGTATAGGCAAAAGCACAAGAGAGTTAACATCAGAGCAGTGAAGCATTGGTGTAGACAGATCCTGAGTGGACTTCTCTATCTTCATAGCCTTGACCCGCCTGTGATCCATAGAGATCTCAAATGTGATAACATTTTTATCAATGGAAACCAAGGGGAAGTAAAGATTGGAGATCTTGGCCTGGCAGCAATTCTCCGGAAATCCCATGCTGCTCATTGTGTAGGAACACCTGAGTTCATGGCCCCCGAAGTATATGAAGAGGCATATAATGAATTAGTTGACATATATTCCTTTGGGATGTGCATATTGGAGATGGTCACATTTGAATATCCATATAGTGAATGCACTCATCCGGCTCAAATCTACAAGAAAGTTATTTCTGGGAAAAAGCCAGATGCTTTGTATAAAGTGAAGGATCCAGAAGTGCGACAATTTGTTGAGAAATGCTTGGCCACAGTGTCTCTAAGGCTTACTGCAAACGAGCTTCTAGATGACCCGTTTCTTCGAATTGATGATTATGAATATGATTTGAGACCCGTAGACAGTGGGGAATTGGATGACTTTGGTCCTCTCATCAGACAGCCATTCTTGGATCTCCATCGAAGCTATAGTAACTTCACTGAGATTGAACCTAGTGGAATCGAACTTTTTGAGTATCATGATGACGAGCCCTCTGAAGATGTTGACATAAGCATCAAGGGCAAGAGGAAAGATGATGGTGGCATCTTTTTGAGACTAAGAATTGCTGATAAAGAAGGTCGCATTCGAAATATTTATTTCCCATTTGACATAGAAATGGACACAGCAATAAGTGTGGCAACTGAAATGGTTGCAGAACTCGACATTACTGATCAGGATGTTACCAGAATAGCAGATATGATAGATGGGGAAATTGCTTCCTTGGTACCTGAATGGAGGCCAGGACCAGGAATTGATGAAACTCCCCGTTTTGCAATTCAAGGTTTATGTCACAATTGTGTGTCTAATCACACTTCTAGTGGCTCTCTTCTAGATTTTCTTTCACATAATCCAAGTAGCAAGAACTTGCAACTTCTCGAGTGTTGTAGGCATGGATGTGCTTCAATGCATGGGCGGTTTGAGGAGATTACGTTCCAATCTGAGGAGTATGACAATCATGTTAGAGAGGGTCAAAACATATCAAGCCAATCAGATTGCTTGCAGTTTCAGGAGATATGGATTCAGCATGAAAGTCGTGAACTGAGTCCGGTAGAGTCTGATCTAAGCCATTCTGATGAACATTATGAACAATTAGGTAAATCAGTATCAGCTGAAGATAAAGGACTGGATGTTCGGGAAAACAAGTTCTCCCCCGACGAAGCAGCAAATTCCTTAAGAAATTTGTCAGGGAACCATGATTTTTCTGCTATCGGTGCGTTGTATACTGACTTTGCGGATGACCGTGAGAAAGAGATCCAAAAGGAATTGCGATGGCTCAAAGCAAGATACCAAATGGAGTTAAGGGAACTCAAGGATCAACAGTTTGGGCTAACAGCTAAATCTTCATATTGTAGTGACAGAGAGCACAAAACAGAAGATGAAGTTAAGCCACCTTCACTGACAGAAACATTAAAAGGAGGCAACAATGGGATTCACTTGAAACCCGTTACTAACAACTGGAACTATGATTCAAGTAACCATCCTCGTGTCCATAAGAGCAGCCCCAATTTGGACACCCAAAGGGACCAAAATTGTGAGGCGATGCAATCATCCCCTGGAGAAGTTATGATTACTGCAAAGAGTTTTTACACAGGCTCCTTGCTTCCACCCTCTCTGCACAGGACAGTTTCCCTCCCAGTTGATGCTTTTGATTTATAA 2175 0.4156 MNGVTLLEPDDSEFVEVDPTGRYGRYNEILGKGASKTVYRAFDEYQGIEVAWNQVKLYDFLQSPEDLERLYCEIHLLKTLKHRNIMKFYTSWVDTANRNINFVTEMFTSGTLRQYRQKHKRVNIRAVKHWCRQILSGLLYLHSLDPPVIHRDLKCDNIFINGNQGEVKIGDLGLAAILRKSHAAHCVGTPEFMAPEVYEEAYNELVDIYSFGMCILEMVTFEYPYSECTHPAQIYKKVISGKKPDALYKVKDPEVRQFVEKCLATVSLRLTANELLDDPFLRIDDYEYDLRPVDSGELDDFGPLIRQPFLDLHRSYSNFTEIEPSGIELFEYHDDEPSEDVDISIKGKRKDDGGIFLRLRIADKEGRIRNIYFPFDIEMDTAISVATEMVAELDITDQDVTRIADMIDGEIASLVPEWRPGPGIDETPRFAIQGLCHNCVSNHTSSGSLLDFLSHNPSSKNLQLLECCRHGCASMHGRFEEITFQSEEYDNHVREGQNISSQSDCLQFQEIWIQHESRELSPVESDLSHSDEHYEQLGKSVSAEDKGLDVRENKFSPDEAANSLRNLSGNHDFSAIGALYTDFADDREKEIQKELRWLKARYQMELRELKDQQFGLTAKSSYCSDREHKTEDEVKPPSLTETLKGGNNGIHLKPVTNNWNYDSSNHPRVHKSSPNLDTQRDQNCEAMQSSPGEVMITAKSFYTGSLLPPSLHRTVSLPVDAFDL 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi47g00027 724 FunFam Probable serine/threonine-protein kinase WNK1 9 105 - -
Gabi47g00027 724 Gene3D - 353 418 - -
Gabi47g00027 724 Pfam Protein kinase domain 27 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi47g00027 724 FunFam probable serine/threonine-protein kinase WNK9 353 437 - -
Gabi47g00027 724 Gene3D Transferase(Phosphotransferase) domain 1 107 286 - -
Gabi47g00027 724 ProSitePatterns Serine/Threonine protein kinases active-site signature. 148 160 IPR008271 GO:0004672|GO:0006468
Gabi47g00027 724 Gene3D Phosphorylase Kinase; domain 1 8 105 - -
Gabi47g00027 724 SMART serkin_6 24 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi47g00027 724 CDD STKc_WNK 22 281 - -
Gabi47g00027 724 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 356 410 IPR024678 GO:0004674|GO:0005524
Gabi47g00027 724 ProSiteProfiles Protein kinase domain profile. 24 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi47g00027 724 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 10 631 - -
Gabi47g00027 724 SUPERFAMILY Protein kinase-like (PK-like) 27 282 IPR011009 -
Gabi47g00027 724 Coils Coil 592 612 - -
Gabi47g00027 724 MobiDBLite consensus disorder prediction 523 549 - -
Gabi47g00027 724 FunFam probable serine/threonine-protein kinase WNK9 107 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi47g00027 Gabi-Chr47 89306 93019 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi47g00027 1 502 MAP Kinase Kinase Kinase AT3G22420 59.083 0.0 609
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Gabi47g00027 Pkinase 2.7e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi47g00027 K08867 - gmx:100775959 1261.13