LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi47g00024	ATGAATGGGGTCACACTCCTTGAACCAGATGACTCTGAGTTTGTTGAAGTTGATCCAACTGGCAGATATGGCAGATACAATGAAATCCTTGGCAAAGGAGCTTCAAAGACAGTATATAGAGCATTCGATGAGTATCAAGGGATTGAAGTTGCTTGGAACCAGGTCAAGCTCTATGATTTTCTACAAAGCCCTGAAGATCTTGAGAGGCTTTACTGTGAAATTCATCTCCTGAAAACATTGAAGCACAGAAACATTATGAAATTTTACACCTCTTGGGTAGATACTGCAAATAGGAATATCAACTTCGTGACTGAAATGTTCACATCTGGTACACTTAGACAGTATAGGCAAAAGCACAAGAGAGTTAACATCAGAGCAGTGAAGCATTGGTGTAGACAGATCCTGAGTGGACTTCTCTATCTTCATAGCCTTGACCCGCCTGTGATCCATAGAGATCTCAAATGTGATAACATTTTTATCAATGGAAACCAAGGGGAAGTAAAGATTGGAGATCTTGGCCTGGCAGCAATTCTCCGGAAATCCCATGCTGCTCATTGTGTAGGAACACCTGAGTTCATGGCCCCCGAAGTATATGAAGAGGCATATAATGAATTAGTTGACATATATTCCTTTGGGATGTGCATATTGGAGATGGTCACATTTGAATATCCATATAGTGAATGCACTCATCCGGCTCAAATCTACAAGAAAGTTATTTCTGGGAAAAAGCCAGATGCTTTGTATAAAGTGAAGGATCCAGAAGTGCGACAATTTGTTGAGAAATGCTTGGCCACAGTGTCTCTAAGGCTTACTGCAAACGAGCTTCTAGATGACCCGTTTCTTCGAATTGATGATTATGAATATGATTTGAGACCCGTAGACAGTGGGGAATTGGATGACTTTGGTCCTCTCATCAGACAGCCATTCTTGGATCTCCATCGAAGCTATAGTAACTTCAGTAATGAATACTCAAATGGCTTTGGGTACGAAGGAGACTGGTGTTCTCATCCAGCTGAGATTGAACCTAGTGGAATCGAACTTTTTGAGTATCATGATGACGAGCCCTCTGAAGATGTTGACATAAGCATCAAGGGCAAGAGGAAAGATGATGGTGGCATCTTTTTGAGACTAAGAATTGCTGATAAAGAAGGTCGCATTCGAAATATTTATTTCCCATTTGACATAGAAATGGACACAGCAATAAGTGTGGCAACTGAAATGGTTGCAGAACTCGACATTACTGATCAGGATGTTACCAGAATAGCAGATATGATAGATGGGGAAATTGCTTCCTTGGTACCTGAATGGAGGCCAGGACCAGGAATTGATGAAACTCCCCGTTTTGCAATTCAAGGTTTATGTCACAATTGTGTGTCTAATCACACTTCTAGTGGCTCTCTTCTAGATTTTCTTTCACATAATCCAAGTAGCAAGAACTTGCAACTTCTCGAGTGTTGTAGGCATGGATGTGCTTCAATGCATGGGCGGTTTGAGGAGATTACGTTCCAATCTGAGGACCAATCAGATTGCTTGCAGTTTCAGGAGATATGGATTCAGCATGAAAGTCGTGAACTGAGTCCGGTAGAGTCTGATCTAAGCCATTCTGATGAACATTATGAACAATTAGGTAAATCAGTATCAGCTGAAGATAAAGGACTGGATGTTCGGGAAAACAAGTTCTCCCCCGACGAAGCAGCAAATTCCTTAAGAAATTTGTCAGGGAACCATGATTTTTCTGCTATCGGTGCGTTGTATACTGACTTTGCGGATGACCGTGAGAAAGAGATCCAAAAGGAATTGCGATGGCTCAAAGCAAGATACCAAATGGAGTTAAGGGAACTCAAGGATCAACAGTTTGGGCTAACAGCTAAATCTTCATATTGTAGTGACAGAGAGCACAAAACAGAAGATGAAGTTAAGCCACCTTCACTGACAGAAACATTAAAAGGAGGCAACAATGGGATTCACTTGAAACCCGTTACTAACAACTGGAACTATGATTCAAGTAACCATCCTCGTGTCCATAAGAGCAGCCCCAATTTGGACACCCAAAGGGACCAAAATTGTGAGGCGATGCAATCATCCCCTGGAGAAGTTATGATTACTGCAAAGAGTTTTTACACAGGCTCCTTGCTTCCACCCTCTCTGCACAGGACAGTTTCCCTCCCAGTTGATGCTTTTGATTTATAA	2190	0.4174	MNGVTLLEPDDSEFVEVDPTGRYGRYNEILGKGASKTVYRAFDEYQGIEVAWNQVKLYDFLQSPEDLERLYCEIHLLKTLKHRNIMKFYTSWVDTANRNINFVTEMFTSGTLRQYRQKHKRVNIRAVKHWCRQILSGLLYLHSLDPPVIHRDLKCDNIFINGNQGEVKIGDLGLAAILRKSHAAHCVGTPEFMAPEVYEEAYNELVDIYSFGMCILEMVTFEYPYSECTHPAQIYKKVISGKKPDALYKVKDPEVRQFVEKCLATVSLRLTANELLDDPFLRIDDYEYDLRPVDSGELDDFGPLIRQPFLDLHRSYSNFSNEYSNGFGYEGDWCSHPAEIEPSGIELFEYHDDEPSEDVDISIKGKRKDDGGIFLRLRIADKEGRIRNIYFPFDIEMDTAISVATEMVAELDITDQDVTRIADMIDGEIASLVPEWRPGPGIDETPRFAIQGLCHNCVSNHTSSGSLLDFLSHNPSSKNLQLLECCRHGCASMHGRFEEITFQSEDQSDCLQFQEIWIQHESRELSPVESDLSHSDEHYEQLGKSVSAEDKGLDVRENKFSPDEAANSLRNLSGNHDFSAIGALYTDFADDREKEIQKELRWLKARYQMELRELKDQQFGLTAKSSYCSDREHKTEDEVKPPSLTETLKGGNNGIHLKPVTNNWNYDSSNHPRVHKSSPNLDTQRDQNCEAMQSSPGEVMITAKSFYTGSLLPPSLHRTVSLPVDAFDL	729

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi47g00024	729	FunFam	Probable serine/threonine-protein kinase WNK1	9	105	-	-
	Gabi47g00024	729	Gene3D	-	371	436	-	-
	Gabi47g00024	729	PANTHER	SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED	10	636	-	-
	Gabi47g00024	729	Pfam	Protein kinase domain	27	281	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi47g00024	729	MobiDBLite	consensus disorder prediction	528	554	-	-
	Gabi47g00024	729	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	148	160	IPR008271	GO:0004672\|GO:0006468
	Gabi47g00024	729	Coils	Coil	597	617	-	-
	Gabi47g00024	729	Gene3D	Phosphorylase Kinase; domain 1	8	105	-	-
	Gabi47g00024	729	FunFam	probable serine/threonine-protein kinase WNK9	371	455	-	-
	Gabi47g00024	729	SMART	serkin_6	24	281	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi47g00024	729	Pfam	Oxidative-stress-responsive kinase 1 C-terminal domain	374	428	IPR024678	GO:0004674\|GO:0005524
	Gabi47g00024	729	Gene3D	Transferase(Phosphotransferase) domain 1	107	286	-	-
	Gabi47g00024	729	CDD	STKc_WNK	22	281	-	-
	Gabi47g00024	729	ProSiteProfiles	Protein kinase domain profile.	24	281	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi47g00024	729	SUPERFAMILY	Protein kinase-like (PK-like)	27	282	IPR011009	-
	Gabi47g00024	729	MobiDBLite	consensus disorder prediction	632	655	-	-
	Gabi47g00024	729	FunFam	probable serine/threonine-protein kinase WNK9	107	286	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi47g00024	Gabi-Chr47	89306	93020	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi47g00024	127	619	MAP Kinase Kinase Kinase	AT3G04910	60.413	0.0	605

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	WNK_NRBP	Gabi47g00024		Pkinase	2.7e-49	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi47g00024	K08867		-	gmx:100775959	1281.54