Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi47g00023 ATGAATGGGGTCACACTCCTTGAACCAGATGACTCTGAGTTTGTTGAAGTTGATCCAACTGGCAGATATGGCAGATACAATGAAATCCTTGGCAAAGGAGCTTCAAAGACAGTATATAGAGCATTCGATGAGTATCAAGGGATTGAAGTTGCTTGGAACCAGGTCAAGCTCTATGATTTTCTACAAAGCCCTGAAGATCTTGAGAGGCTTTACTGTGAAATTCATCTCCTGAAAACATTGAAGCACAGAAACATTATGAAATTTTACACCTCTTGGGTAGATACTGCAAATAGGAATATCAACTTCGTGACTGAAATGTTCACATCTGGTACACTTAGACAGTATAGGCAAAAGCACAAGAGAGTTAACATCAGAGCAGTGAAGCATTGGTGTAGACAGATCCTGAGTGGACTTCTCTATCTTCATAGCCTTGACCCGCCTGTGATCCATAGAGATCTCAAATGTGATAACATTTTTATCAATGGAAACCAAGGGGAAGTAAAGATTGGAGATCTTGGCCTGGCAGCAATTCTCCGGAAATCCCATGCTGCTCATTGTGTAGGAACACCTGAGTTCATGGCCCCCGAAGTATATGAAGAGGCATATAATGAATTAGTTGACATATATTCCTTTGGGATGTGCATATTGGAGATGGTCACATTTGAATATCCATATAGTGAATGCACTCATCCGGCTCAAATCTACAAGAAAGTTATTTCTGGGAAAAAGCCAGATGCTTTGTATAAAGTGAAGGATCCAGAAGTGCGACAATTTGTTGAGAAATGCTTGGCCACAGTGTCTCTAAGGCTTACTGCAAACGAGCTTCTAGATGACCCGTTTCTTCGAATTGATGATTATGAATATGATTTGAGACCCTTTAATAATCTGACTAAATTGTATATTACAGGTCGCATTCGAAATATTTATTTCCCATTTGACATAGAAATGGACACAGCAATAAGTGTGGCAACTGAAATGGTTGCAGAACTCGACATTACTGATCAGGATGTTACCAGAATAGCAGATATGATAGATGGGGAAATTGCTTCCTTGGTACCTGAATGGAGGCCAGGACCAGGAATTGATGAAACTCCCCGTTTTGCAATTCAAGGTTTATGTCACAATTGTGTGTCTAATCACACTTCTAGTGGCTCTCTTCTAGATTTTCTTTCACATAATCCAAGTAGCAAGAACTTGCAACTTCTCGAGTGTTGTAGGCATGGATGTGCTTCAATGCATGGGCGGTTTGAGGAGATTACGTTCCAATCTGAGGAGTATGACAATCATGTTAGAGAGGGTCAAAACATATCAAGCCAATCAGATTGCTTGCAGTTTCAGGAGATATGGATTCAGCATGAAAGTCGTGAACTGAGTCCGGTAGAGTCTGATCTAAGCCATTCTGATGAACATTATGAACAATTAGGTAAATCAGTATCAGCTGAAGATAAAGGACTGGATGTTCGGGAAAACAAGTTCTCCCCCGACGAAGCAGCAAATTCCTTAAGAAATTTGTCAGGGAACCATGATTTTTCTGCTATCGGTGCGTTGTATACTGACTTTGCGGATGACCGTGAGAAAGAGATCCAAAAGGAATTGCGATGGCTCAAAGCAAGATACCAAATGGAGTTAAGGGAACTCAAGGATCAACAGTTTGGGCTAACAGCTAAATCTTCATATTGTAGTGACAGAGAGCACAAAACAGAAGATGAAGTTAAGCCACCTTCACTGACAGAAACATTAAAAGGAGGCAACAATGGGATTCACTTGAAACCCGTTACTAACAACTGGAACTATGATTCAAGTAACCATCCTCGTGTCCATAAGAGCAGCCCCAATTTGGACACCCAAAGGGACCAAAATTGTGAGGCGATGCAATCATCCCCTGGAGAAGTTATGATTACTGCAAAGAGTTTTTACACAGGCTCCTTGCTTCCACCCTCTCTGCACAGGACAGTTTCCCTCCCAGTTGATGCTTTTGATTTATAA 1986 0.4114 MNGVTLLEPDDSEFVEVDPTGRYGRYNEILGKGASKTVYRAFDEYQGIEVAWNQVKLYDFLQSPEDLERLYCEIHLLKTLKHRNIMKFYTSWVDTANRNINFVTEMFTSGTLRQYRQKHKRVNIRAVKHWCRQILSGLLYLHSLDPPVIHRDLKCDNIFINGNQGEVKIGDLGLAAILRKSHAAHCVGTPEFMAPEVYEEAYNELVDIYSFGMCILEMVTFEYPYSECTHPAQIYKKVISGKKPDALYKVKDPEVRQFVEKCLATVSLRLTANELLDDPFLRIDDYEYDLRPFNNLTKLYITGRIRNIYFPFDIEMDTAISVATEMVAELDITDQDVTRIADMIDGEIASLVPEWRPGPGIDETPRFAIQGLCHNCVSNHTSSGSLLDFLSHNPSSKNLQLLECCRHGCASMHGRFEEITFQSEEYDNHVREGQNISSQSDCLQFQEIWIQHESRELSPVESDLSHSDEHYEQLGKSVSAEDKGLDVRENKFSPDEAANSLRNLSGNHDFSAIGALYTDFADDREKEIQKELRWLKARYQMELRELKDQQFGLTAKSSYCSDREHKTEDEVKPPSLTETLKGGNNGIHLKPVTNNWNYDSSNHPRVHKSSPNLDTQRDQNCEAMQSSPGEVMITAKSFYTGSLLPPSLHRTVSLPVDAFDL 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi47g00023 661 MobiDBLite consensus disorder prediction 460 486 - -
Gabi47g00023 661 Coils Coil 529 549 - -
Gabi47g00023 661 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 10 568 - -
Gabi47g00023 661 ProSitePatterns Serine/Threonine protein kinases active-site signature. 148 160 IPR008271 GO:0004672|GO:0006468
Gabi47g00023 661 Gene3D Transferase(Phosphotransferase) domain 1 107 286 - -
Gabi47g00023 661 SMART serkin_6 24 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi47g00023 661 SUPERFAMILY Protein kinase-like (PK-like) 27 282 IPR011009 -
Gabi47g00023 661 Pfam Protein kinase domain 27 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi47g00023 661 CDD STKc_WNK 22 281 - -
Gabi47g00023 661 FunFam Probable serine/threonine-protein kinase WNK1 9 105 - -
Gabi47g00023 661 ProSiteProfiles Protein kinase domain profile. 24 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi47g00023 661 MobiDBLite consensus disorder prediction 564 587 - -
Gabi47g00023 661 FunFam probable serine/threonine-protein kinase WNK9 107 286 - -
Gabi47g00023 661 Gene3D Phosphorylase Kinase; domain 1 8 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi47g00023 Gabi-Chr47 89306 93020 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi47g00023 1 439 MAP Kinase Kinase Kinase AT3G22420 54.244 1.61e-180 524
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Gabi47g00023 Pkinase 2.2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi47g00023 K08867 - aew:130775058 777.704