LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi47g00021	ATGAATGGGGTCACACTCCTTGAACCAGATGACTCTGAGTTTGTTGAAGTTGATCCAACTGGCAGATATGGCAGATACAATGAAATCCTTGGCAAAGGAGCTTCAAAGACAGTATATAGAGCATTCGATGAGTATCAAGGGATTGAAGTTGCTTGGAACCAGGTCAAGCTCTATGATTTTCTACAAAGCCCTGAAGATCTTGAGAGGCTTTACTGTGAAATTCATCTCCTGAAAACATTGAAGCACAGAAACATTATGAAATTTTACACCTCTTGGGTAGATACTGCAAATAGGAATATCAACTTCGTGACTGAAATGTTCACATCTGGTACACTTAGACAGTATAGGCAAAAGCACAAGAGAGTTAACATCAGAGCAGTGAAGCATTGGTGTAGACAGATCCTGAGTGGACTTCTCTATCTTCATAGCCTTGACCCGCCTGTGATCCATAGAGATCTCAAATGTGATAACATTTTTATCAATGGAAACCAAGGGGAAGTAAAGATTGGAGATCTTGGCCTGGCAGCAATTCTCCGGAAATCCCATGCTGCTCATTGTGTAGGAACACCTGAGTTCATGGCCCCCGAAGTATATGAAGAGGCATATAATGAATTAGTTGACATATATTCCTTTGGGATGTGCATATTGGAGATGGTCACATTTGAATATCCATATAGTGAATGCACTCATCCGGCTCAAATCTACAAGAAAGTTATTTCTGGGAAAAAGCCAGATGCTTTGTATAAAGTGAAGGATCCAGAAGTGCGACAATTTGTTGAGAAATGCTTGGCCACAGTGTCTCTAAGGCTTACTGCAAACGAGCTTCTAGATGACCCGTTTCTTCGAATTGATGATTATGAATATGATTTGAGACCCGTAGACAGTGGGGAATTGGATGACTTTGATGTTGACATAAGCATCAAGGGCAAGAGGAAAGATGATGGTGGCATCTTTTTGAGACTAAGAATTGCTGATAAAGAAGGTCGCATTCGAAATATTTATTTCCCATTTGACATAGAAATGGACACAGCAATAAGTGTGGCAACTGAAATGGTTGCAGAACTCGACATTACTGATCAGGATGTTACCAGAATAGCAGATATGATAGATGGGGAAATTGCTTCCTTGGTACCTGAATGGAGGCCAGGACCAGGAATTGATGAAACTCCCCGTTTTGCAATTCAAGGTTTATGTCACAATTGTGTGTCTAATCACACTTCTAGTGGCTCTCTTCTAGATTTTCTTTCACATAATCCAAGTAGCAAGAACTTGCAACTTCTCGAGTGTTGTAGGCATGGATGTGCTTCAATGCATGGGCGGTTTGAGGAGATTACGTTCCAATCTGAGGAGTATGACAATCATGTTAGAGAGGGTCAAAACATATCAAGCCAATCAGATTGCTTGCAGTTTCAGGAGATATGGATTCAGCATGAAAGTCGTGAACTGAGTCCGGTAGAGTCTGATCTAAGCCATTCTGATGAACATTATGAACAATTAGGTAAATCAGTATCAGCTGAAGATAAAGGACTGGATGTTCGGGAAAACAAGTTCTCCCCCGACGAAGCAGCAAATTCCTTAAGAAATTTGTCAGGGAACCATGATTTTTCTGCTATCGGTGCGTTGTATACTGACTTTGCGGATGACCGTGAGAAAGAGATCCAAAAGGAATTGCGATGGCTCAAAGCAAGATACCAAATGGAGTTAAGGGAACTCAAGGATCAACAGTTTGGGCTAACAGCTAAATCTTCATATTGTAGTGACAGAGAGCACAAAACAGAAGATGAAGTTAAGCCACCTTCACTGACAGAAACATTAAAAGGAGGCAACAATGGGATTCACTTGAAACCCGTTACTAACAACTGGAACTATGATTCAAGTAACCATCCTCGTGTCCATAAGAGCAGCCCCAATTTGGACACCCAAAGGGACCAAAATTGTGAGGCGATGCAATCATCCCCTGGAGAAGTTATGATTACTGCAAAGAGTTTTTACACAGGCTCCTTGCTTCCACCCTCTCTGCACAGGACAGTTTCCCTCCCAGTTGATGCTTTTGATTTATAA	2061	0.4144	MNGVTLLEPDDSEFVEVDPTGRYGRYNEILGKGASKTVYRAFDEYQGIEVAWNQVKLYDFLQSPEDLERLYCEIHLLKTLKHRNIMKFYTSWVDTANRNINFVTEMFTSGTLRQYRQKHKRVNIRAVKHWCRQILSGLLYLHSLDPPVIHRDLKCDNIFINGNQGEVKIGDLGLAAILRKSHAAHCVGTPEFMAPEVYEEAYNELVDIYSFGMCILEMVTFEYPYSECTHPAQIYKKVISGKKPDALYKVKDPEVRQFVEKCLATVSLRLTANELLDDPFLRIDDYEYDLRPVDSGELDDFDVDISIKGKRKDDGGIFLRLRIADKEGRIRNIYFPFDIEMDTAISVATEMVAELDITDQDVTRIADMIDGEIASLVPEWRPGPGIDETPRFAIQGLCHNCVSNHTSSGSLLDFLSHNPSSKNLQLLECCRHGCASMHGRFEEITFQSEEYDNHVREGQNISSQSDCLQFQEIWIQHESRELSPVESDLSHSDEHYEQLGKSVSAEDKGLDVRENKFSPDEAANSLRNLSGNHDFSAIGALYTDFADDREKEIQKELRWLKARYQMELRELKDQQFGLTAKSSYCSDREHKTEDEVKPPSLTETLKGGNNGIHLKPVTNNWNYDSSNHPRVHKSSPNLDTQRDQNCEAMQSSPGEVMITAKSFYTGSLLPPSLHRTVSLPVDAFDL	686

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi47g00021	686	Pfam	Oxidative-stress-responsive kinase 1 C-terminal domain	318	372	IPR024678	GO:0004674\|GO:0005524
	Gabi47g00021	686	MobiDBLite	consensus disorder prediction	485	511	-	-
	Gabi47g00021	686	PANTHER	SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED	10	593	-	-
	Gabi47g00021	686	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	148	160	IPR008271	GO:0004672\|GO:0006468
	Gabi47g00021	686	FunFam	probable serine/threonine-protein kinase WNK9	107	286	-	-
	Gabi47g00021	686	MobiDBLite	consensus disorder prediction	589	612	-	-
	Gabi47g00021	686	SMART	serkin_6	24	281	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi47g00021	686	Pfam	Protein kinase domain	27	281	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi47g00021	686	Gene3D	-	315	380	-	-
	Gabi47g00021	686	FunFam	probable serine/threonine-protein kinase WNK9	315	399	-	-
	Gabi47g00021	686	CDD	STKc_WNK	22	281	-	-
	Gabi47g00021	686	ProSiteProfiles	Protein kinase domain profile.	24	281	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi47g00021	686	Gene3D	Transferase(Phosphotransferase) domain 1	107	286	-	-
	Gabi47g00021	686	SUPERFAMILY	Protein kinase-like (PK-like)	27	282	IPR011009	-
	Gabi47g00021	686	Gene3D	Phosphorylase Kinase; domain 1	8	105	-	-
	Gabi47g00021	686	Coils	Coil	554	574	-	-
	Gabi47g00021	686	FunFam	Probable serine/threonine-protein kinase WNK1	9	105	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi47g00021	Gabi-Chr47	89306	93021	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi47g00021	1	464	MAP Kinase Kinase Kinase	AT3G22420	57.565	0.0	587

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	WNK_NRBP	Gabi47g00021		Pkinase	2.4e-49	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi47g00021	K08867		-	gmx:100775959	1152.12