Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi47g00020 ATGAATGGGGTCACACTCCTTGAACCAGATGACTCTGAGTTTGTTGAAGTTGATCCAACTGGCAGATATGGCAGATACAATGAAATCCTTGGCAAAGGAGCTTCAAAGACAGTATATAGAGCATTCGATGAGTATCAAGGGATTGAAGTTGCTTGGAACCAGGTCAAGCTCTATGATTTTCTACAAAGCCCTGAAGATCTTGAGAGGCTTTACTGTGAAATTCATCTCCTGAAAACATTGAAGCACAGAAACATTATGAAATTTTACACCTCTTGGGTAGATACTGCAAATAGGAATATCAACTTCGTGACTGAAATGTTCACATCTGGTACACTTAGACAGTATAGGCAAAAGCACAAGAGAGTTAACATCAGAGCAGTGAAGCATTGGTGTAGACAGATCCTGAGTGGACTTCTCTATCTTCATAGCCTTGACCCGCCTGTGATCCATAGAGATCTCAAATGTGATAACATTTTTATCAATGGAAACCAAGGGGAAGTAAAGATTGGAGATCTTGGCCTGGCAGCAATTCTCCGGAAATCCCATGCTGCTCATTGTGTAGGAACACCTGAGTTCATGGCCCCCGAAGTATATGAAGAGGCATATAATGAATTAGTTGACATATATTCCTTTGGGATGTGCATATTGGAGATGGTCACATTTGAATATCCATATAGTGAATGCACTCATCCGGCTCAAATCTACAAGAAAGTTATTTCTGGGAAAAAGCCAGATGCTTTGTATAAAGTGAAGGATCCAGAAGTGCGACAATTTGTTGAGAAATGCTTGGCCACAGTGTCTCTAAGGCTTACTGCAAACGAGCTTCTAGATGACCCGTTTCTTCGAATTGATGATTATGAATATGATTTGAGACCCGTAGACAGTGATAGTAACTTCAGTAATGAATACTCAAATGGCTTTGGGTACGAAGGAGACTGGTGTTCTCATCCAGCTGAGATTGAACCTAGTGGAATCGAACTTTTTGAGTATCATGATGACGAGCCCTCTGAAGATGTTGACATAAGCATCAAGGGCAAGAGGAAAGATGATGGTGGCATCTTTTTGAGACTAAGAATTGCTGATAAAGAAGGTCGCATTCGAAATATTTATTTCCCATTTGACATAGAAATGGACACAGCAATAAGTGTGGCAACTGAAATGGTTGCAGAACTCGACATTACTGATCAGGATGTTACCAGAATAGCAGATATGATAGATGGGGAAATTGCTTCCTTGGTACCTGAATGGAGGCCAGGACCAGGAATTGATGAAACTCCCCGTTTTGCAATTCAAGGTTTATGTCACAATTGTGTGTCTAATCACACTTCTAGTGGCTCTCTTCTAGATTTTCTTTCACATAATCCAAGTAGCAAGAACTTGCAACTTCTCGAGTGTTGTAGGCATGGATGTGCTTCAATGCATGGGCGGTTTGAGGAGATTACGTTCCAATCTGAGGAGTATGACAATCATGTTAGAGAGGGTCAAAACATATCAAGCCAATCAGATTGCTTGCAGTTTCAGGAGATATGGATTCAGCATGAAAGTCGTGAACTGAGTCCGGTAGAGTCTGATCTAAGCCATTCTGATGAACATTATGAACAATTAGGTAAATCAGTATCAGCTGAAGATAAAGGACTGGATGTTCGGGAAAACAAGTTCTCCCCCGACGAAGCAGCAAATTCCTTAAGAAATTTGTCAGGGAACCATGATTTTTCTGCTATCGGTGCGTTGTATACTGACTTTGCGGATGACCGTGAGAAAGAGATCCAAAAGGAATTGCGATGGCTCAAAGCAAGATACCAAATGGAGTTAAGGGAACTCAAGGATCAACAGTTTGGGCTAACAGCTAAATCTTCATATTGTAGTGACAGAGATAACCATCCTCGTGTCCATAAGAGCAGCCCCAATTTGGACACCCAAAGGGACCAAAATTGTGAGGCGATGCAATCATCCCCTGGAGAAGTTATGATTACTGCAAAGAGTTTTTACACAGGCTCCTTGCTTCCACCCTCTCTGCACAGGACAGTTTCCCTCCCAGTTGATGCTTTTGATTTATAA 2058 0.4155 MNGVTLLEPDDSEFVEVDPTGRYGRYNEILGKGASKTVYRAFDEYQGIEVAWNQVKLYDFLQSPEDLERLYCEIHLLKTLKHRNIMKFYTSWVDTANRNINFVTEMFTSGTLRQYRQKHKRVNIRAVKHWCRQILSGLLYLHSLDPPVIHRDLKCDNIFINGNQGEVKIGDLGLAAILRKSHAAHCVGTPEFMAPEVYEEAYNELVDIYSFGMCILEMVTFEYPYSECTHPAQIYKKVISGKKPDALYKVKDPEVRQFVEKCLATVSLRLTANELLDDPFLRIDDYEYDLRPVDSDSNFSNEYSNGFGYEGDWCSHPAEIEPSGIELFEYHDDEPSEDVDISIKGKRKDDGGIFLRLRIADKEGRIRNIYFPFDIEMDTAISVATEMVAELDITDQDVTRIADMIDGEIASLVPEWRPGPGIDETPRFAIQGLCHNCVSNHTSSGSLLDFLSHNPSSKNLQLLECCRHGCASMHGRFEEITFQSEEYDNHVREGQNISSQSDCLQFQEIWIQHESRELSPVESDLSHSDEHYEQLGKSVSAEDKGLDVRENKFSPDEAANSLRNLSGNHDFSAIGALYTDFADDREKEIQKELRWLKARYQMELRELKDQQFGLTAKSSYCSDRDNHPRVHKSSPNLDTQRDQNCEAMQSSPGEVMITAKSFYTGSLLPPSLHRTVSLPVDAFDL 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi47g00020 685 Gene3D - 351 416 - -
Gabi47g00020 685 Coils Coil 590 610 - -
Gabi47g00020 685 MobiDBLite consensus disorder prediction 622 636 - -
Gabi47g00020 685 ProSitePatterns Serine/Threonine protein kinases active-site signature. 148 160 IPR008271 GO:0004672|GO:0006468
Gabi47g00020 685 FunFam probable serine/threonine-protein kinase WNK9 107 286 - -
Gabi47g00020 685 SMART serkin_6 24 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi47g00020 685 Pfam Protein kinase domain 27 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi47g00020 685 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 10 630 - -
Gabi47g00020 685 MobiDBLite consensus disorder prediction 521 547 - -
Gabi47g00020 685 MobiDBLite consensus disorder prediction 619 642 - -
Gabi47g00020 685 CDD STKc_WNK 22 281 - -
Gabi47g00020 685 SUPERFAMILY Protein kinase-like (PK-like) 27 282 IPR011009 -
Gabi47g00020 685 ProSiteProfiles Protein kinase domain profile. 24 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi47g00020 685 FunFam probable serine/threonine-protein kinase WNK9 351 435 - -
Gabi47g00020 685 Gene3D Transferase(Phosphotransferase) domain 1 107 286 - -
Gabi47g00020 685 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 354 408 IPR024678 GO:0004674|GO:0005524
Gabi47g00020 685 Gene3D Phosphorylase Kinase; domain 1 8 105 - -
Gabi47g00020 685 FunFam Probable serine/threonine-protein kinase WNK1 9 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi47g00020 Gabi-Chr47 89304 93034 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi47g00020 1 500 MAP Kinase Kinase Kinase AT3G22420 58.000 0.0 602
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Gabi47g00020 Pkinase 2.4e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi47g00020 K08867 - gmx:100775959 1191.02