Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4798g00001 ATGGAATTGCCTTCTGCAATCCATGTCAAGCGCATTGCTAAAGATCCTACTGACCAGACTGGTGAATCTCTGCTTGTCATTAAGGGGCCCCAGGGAAGAATAAATAGAGCTATTTGGGGACCCCTCAACAAATCTATTATTAGTGCCGGAGAAGATGCTATTATTCGTATCTGGGATTCTGAGACCGGAAAACTACTTAAAGAGTCAGATAAGGAATCTGGCCACAAAAAGACAATAACATCACTTGCAAAATCTGCAGATGGTTCACATTTCCTTACTGGCTCCCTTGATAAGTCTGCTAGGCTTTGGGATACCAGAACCTTAACTCTTATCAAGACATTCAACAAAAGACCCTAA 357 0.4202 MELPSAIHVKRIAKDPTDQTGESLLVIKGPQGRINRAIWGPLNKSIISAGEDAIIRIWDSETGKLLKESDKESGHKKTITSLAKSADGSHFLTGSLDKSARLWDTRTLTLIKTFNKRP 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4798g00001 118 Pfam WD domain, G-beta repeat 25 59 IPR001680 GO:0005515
Gabi4798g00001 118 Pfam WD domain, G-beta repeat 73 104 IPR001680 GO:0005515
Gabi4798g00001 118 ProSiteProfiles Trp-Asp (WD) repeats profile. 72 113 IPR001680 GO:0005515
Gabi4798g00001 118 ProSiteProfiles Trp-Asp (WD) repeats profile. 27 68 IPR001680 GO:0005515
Gabi4798g00001 118 SUPERFAMILY WD40 repeat-like 20 114 IPR036322 GO:0005515
Gabi4798g00001 118 ProSitePatterns Trp-Asp (WD) repeats signature. 46 60 IPR019775 -
Gabi4798g00001 118 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 27 64 - -
Gabi4798g00001 118 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT I 4 115 - -
Gabi4798g00001 118 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 72 107 - -
Gabi4798g00001 118 Gene3D - 7 117 IPR015943 GO:0005515
Gabi4798g00001 118 SMART WD40_4 62 104 IPR001680 GO:0005515
Gabi4798g00001 118 SMART WD40_4 20 59 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4798g00001 Gabi-Chr4798 6999 7689 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4798g00001 5 114 Eukaryotic Initiation Factors Gene Family AT2G46290 71.429 9.00e-54 170
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4798g00001 K03246 - gmx:100793485 216.468