Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4796g00011 ATGGTGCCTGAAAACATGAAGAAACAACTTGCTTTGGCTTTGAGAAGCATCCAGTGGAGCTACGCAATCTTCTGGTCCAGTTCAGCTACCCAACCCGGGGTCTTGAGCTGGGGGGAAGGTTATTACAATGGAGATATTAAGACTAGGAAAACAAGTCAAGGAGTAGAACTTAATTCTGATCAAATAGGCTTGCAGAGGAGTGAGCAACTGCGAGAGCTATTCAAGTCCCTCAAAACTGCAGAAACCAGCCCACAAACCAAAAGGCCTTCAGCGGCACTGTCCCCTGAAGATCTTACAGATACTGAGTGGTATTATTTGGTTTGCATGTCCTTCGTATTCAACATTGGCAAAGGGTTACCAGGAAGAGCTCTAGCAAATGGCCAACCCATTTGGCTCAACAATGCCAATTCCACTGATTGTAGAGTTTTTAGTCGCTCTCTGCTGGCAAAGAGTGCATCCATTCAGACAGTGGCGTGCTTTCCTTTTATGGAAGGGGTTATTGAGCTAGGTACAACTGATCTGGTCTCAGAAGACCTCAGTATCCTTCAACGGATCAGAACTTCTTTCTTGAATATTCTGTATGTCAATGTTCCTAATAAGTCTGGAGCTACATTGAAATCAAGAAATGAGGAAGATATTGCTTGTGTAGCATTTGATCATAATGCATATGATGTTGAATCAATTCCAGAAGTAGGGTATGAAGTAATCAACACAGCCTCTCCTAATGGTAGTTCAAATGCTTTACAAGCCAATCAAGCACCAGATGAAACATGCATGGTTGAAAAGATAAACGGTGGCACCTCTCAATTCCAAAGCTGGCAAGTTATGGATGATGAATTGAGCAACTGTGTCCCTAACTCCATGAATTCTAGTGACTGTATATCACAAACTTTTGCCAGCTATGAGAAGATTGCTTCTGCTTCCATGGGTGAAAACCCTTCTGACCCTTGTGCTAGAGACATTCAAAAGTGCAATAACCCAAAAATGACCTTAGTGGATCCTCTAAGTGATGATCGCCATTATCAGAGAGTTCTTTCTTCCATTTTAAAAACCTCAGACCAGTTAATTATGGGGATGCATTTTCAAAATTCTCATCGTGAATCAAGCTTTGCCAGTTGGAAGAAAGGAGGGGCAATAGATTACCAAAGGCCAAGAGCAGGAACCTCACAAAACTTATTGAAGAAAGTAGTGTTTGAAGTTCCAAGGATGCACTTGGATGGGCTGCTCGAGTCTCAAGAAGAGAATGATTATAAAGAAGGAATGAGACTAGAGGGTGATGAAATTGGCATGAACCACGTTATGTCAGAAAGAAGGAGAAGAGCAAAACTAAATGAAAGGTTTTTAACCCTTAGATCAATGGTCCCTTCAATTAGTAAGGATGACAAAGTTTCAATACTAGATGATGCAATTGAATACCTTAGAAAGCTTGAGAAAAGGATAGGAGAGTTGGAAGCTCGCAGGGAGCTAATAGATATGGAGACTAGGACTAAAAAATCACCTCAAGATTTGGAGGAGAGGACTTCTGATCAGTATTTTAACAAAACTAACAATGGCAAGAAATCAGTGATAAAAAAGAGGAAAGCTTGTGAGATAGATGAGACAGGGCTAGAGATTAACTCAGATGCTTTTAGAGGCAGTTCAACTAAAGATATTACTGTCAATATGAGTGACAATAAAGTTGTGATCGAAATGAAGTGCCCTTCGAGAGCAGGAAGACTGCTGGAAATTATGGAAGCAGTTAACAGTCTCAGTATAGACTTCAATTCAGTTCAGTCGACAGAAGCTGATGGGAATCTTTTTCTGACCATTAAATCTAAGTTCACAGGATCAACTGTTGCAACAGCAAAAAGGATCAAACAAACACTCCAAAAAGTGGCTTCGAAGTGTTGA 1890 0.4079 MVPENMKKQLALALRSIQWSYAIFWSSSATQPGVLSWGEGYYNGDIKTRKTSQGVELNSDQIGLQRSEQLRELFKSLKTAETSPQTKRPSAALSPEDLTDTEWYYLVCMSFVFNIGKGLPGRALANGQPIWLNNANSTDCRVFSRSLLAKSASIQTVACFPFMEGVIELGTTDLVSEDLSILQRIRTSFLNILYVNVPNKSGATLKSRNEEDIACVAFDHNAYDVESIPEVGYEVINTASPNGSSNALQANQAPDETCMVEKINGGTSQFQSWQVMDDELSNCVPNSMNSSDCISQTFASYEKIASASMGENPSDPCARDIQKCNNPKMTLVDPLSDDRHYQRVLSSILKTSDQLIMGMHFQNSHRESSFASWKKGGAIDYQRPRAGTSQNLLKKVVFEVPRMHLDGLLESQEENDYKEGMRLEGDEIGMNHVMSERRRRAKLNERFLTLRSMVPSISKDDKVSILDDAIEYLRKLEKRIGELEARRELIDMETRTKKSPQDLEERTSDQYFNKTNNGKKSVIKKRKACEIDETGLEINSDAFRGSSTKDITVNMSDNKVVIEMKCPSRAGRLLEIMEAVNSLSIDFNSVQSTEADGNLFLTIKSKFTGSTVATAKRIKQTLQKVASKC 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4796g00011 629 PANTHER TRANSCRIPTION FACTOR TT8 2 627 - -
Gabi4796g00011 629 Pfam Helix-loop-helix DNA-binding domain 431 477 IPR011598 GO:0046983
Gabi4796g00011 629 Coils Coil 466 493 - -
Gabi4796g00011 629 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 427 476 IPR011598 GO:0046983
Gabi4796g00011 629 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 428 492 IPR036638 GO:0046983
Gabi4796g00011 629 Gene3D - 428 492 IPR036638 GO:0046983
Gabi4796g00011 629 Gene3D - 100 172 IPR029016 -
Gabi4796g00011 629 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 7 189 IPR025610 -
Gabi4796g00011 629 SMART finulus 433 482 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4796g00011 Gabi-Chr4796 66918 70863 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4796g00011 2 629 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G41315 47.741 0.0 548
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi4796g00011 bHLH-MYC_N 1.3e-51 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4796g00011 - - gmx:100808167 981.474