Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi478g00005 ATGGGTCGTGTTAAACTTGAAATAAAAAGAATAGAAAACACCACCAATCGACAAGTTACATTCTCAAAGCGTAGAAATGGCCTCATCAAGAAAGCTTACGAGTTATCTATCCTATGTGACATTGATATTGCCCTTATTATGTTTTCTCCTTCAGGACGTCTCAGCCACTTTTCTGGCAAAAGAAGGATTGAGGATGTTTTTACACGTTACATTAATCTTCCTGACCAAGAAAGAGATAACGCTGTAAGTTTTCCTGAGCAACCCTACCGCAGGGGTATTCAAAACAAAGAGTATTTGCTTAGGACCCTTCAACAACTGAGGAGTGAAAATGACATAGCTCTTCAGCTAGCCAATCCGGGAGACATTAACTCTGAGATTGAGGAACTCCAACAAGAAGTTAGTAGGTTACAGCAACAACTTCAAATGGCCGAGGAGCAGATAAGGATATATGAACCCGACCCATTAAAGATGACATCTATGGGGGAGCTCGAAGCCAGCGAAAAGCACCTGGTAGATACCTTAACACGTGTCATACAGAGAAAGGAATATATGTTGAGCAATCATCTATCTTCGTATGATCCATCTGGTATTCAGCAGGGGATGCCGACAACTTTCGAGAATGTAGGTTGGTTGCAGGATGGTAGTCAGAACCATTCCCAGATGTTTGATACATCCGCTCCTTTGGATCATCTCAGGGATTTGTCGTCCACCGTGTACGGTTCATTTTCACATGGGACGAGTTCGAATGCTGATCCACGAGGCATGGGAGAGTGTCACGTGACAAATCCAAGCGATGGGAACCTCGAAGCATGGCCTCAAGGATACACATTGTATCCTCATCATATTCAACATGACATGATGGGACATGACATGCCAGATATGATGCCACATGGGCAGGTGAATATCCCAATCACTGCCTCACACGTGGAACCGCCCAAGAATGAATCTGCAGAATATGATTCTGCTGAGTTTGGACTGGGCTTTCATCTTGGCCTAATGCAGCTGATAGGCATCCCAGTACTTAGACCAGCATTTGCAAAAGATACCTCTTCCAATGGATCGGATGACAAACCATACTAA 1080 0.4389 MGRVKLEIKRIENTTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSGRLSHFSGKRRIEDVFTRYINLPDQERDNAVSFPEQPYRRGIQNKEYLLRTLQQLRSENDIALQLANPGDINSEIEELQQEVSRLQQQLQMAEEQIRIYEPDPLKMTSMGELEASEKHLVDTLTRVIQRKEYMLSNHLSSYDPSGIQQGMPTTFENVGWLQDGSQNHSQMFDTSAPLDHLRDLSSTVYGSFSHGTSSNADPRGMGECHVTNPSDGNLEAWPQGYTLYPHHIQHDMMGHDMPDMMPHGQVNIPITASHVEPPKNESAEYDSAEFGLGFHLGLMQLIGIPVLRPAFAKDTSSNGSDDKPY 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi478g00005 359 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 209 - -
Gabi478g00005 359 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Gabi478g00005 359 FunFam MADS-box transcription factor 41 13 119 - -
Gabi478g00005 359 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gabi478g00005 359 SUPERFAMILY SRF-like 2 81 IPR036879 GO:0003677|GO:0046983
Gabi478g00005 359 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Gabi478g00005 359 Coils Coil 126 146 - -
Gabi478g00005 359 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Gabi478g00005 359 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gabi478g00005 359 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gabi478g00005 359 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gabi478g00005 359 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gabi478g00005 359 Gene3D - 13 88 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi478g00005 Gabi-Chr478 143429 150646 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi478g00005 1 306 Type I MADS-box Gene Family AT1G22130 59.554 2.46e-123 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gabi478g00005 SRF-TF 1.2e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi478g00005 - - pvu:PHAVU_008G170400g 562.762