Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4789g00009 ATGATGGCTCCTTCTCATCCACCCCATCAACTTCATTATCATCATTGGGCCCCATCTCCATCTCCATCTCCGTCTCCAACGCCACTCGTTAACAAGTCTTCCTTATCCCCGTCGTCAAAGTTGCCAGCGGTGGACTTCACCCCGCCTTTAATAGCAATGGTGGTGGTTGTCGCCACCGCCTTTGTCGTCGTTACTTATTCTCGCCTTATCGCCCGCCACCTCAGACCTCCCATCCACCGCCTACTCCGGCGGTTTCGGCGGCGGTCCTTCCTACCGTCATCATTGAGCGACGTTGACTCCCTCCCTTACGAGTCACCTTTCGATGGCCCACATCATGTGATGTTCTCTCCTTACGGTCTTGACGAGTCTGTTATCAAAACCATACCTTTCTCTCTCTACACCGCCAAATACGACAACCGTTTCGAGGATTCACGCCGTGACTGCGCCGTTTGCTTGCTCGAATTCGAAGACGACGATTACGTTCGCACGCTTCCCGTTTGCTCCCACACTTTCCACGTTGACTGCATCGACGCTTGGCTTCGTTCCCACGCTAACTGCCCTCTCTGCCGTGCCGGAGTTCTCTGCGCTCAATCTCCGTTCACGCCAATGATGGCCGCAAGGATCCGACCTAGCCTCGACGACGACGCCATTCTCCACCGGATTAATATGGAACCCATCCTCGATGCTCCGCTTCCGCCGCCGTCTCACTCCTCCTTCCCGGAGATCGTGCCCTGCGTCGACGACCACTCTCCGAGGAGGAACAACGGCAATTCGGAGGATCGGTTTAACGGAAGGGACTTTCTCCTGAAGCGGTCCTATTCGTTCGGGTTCGAGCGGAGCCTGGCGTCGGAGAGGATGGTTATGGAGCCGGCGACTGCGTCGCCGTGGCGGTACCGGAGAGGGAGCAACAGTTTCTGGAGTAAGAGGCCGTCGCCGTTTGGATCGCTGGGGAAGCCGCGGGTGTTTTCGTTCAGGTATTACAGAGGGATGAAGTCTCCGTTTTTCCGGCGAAGGGGGTTCTTTCCGTTGTCGGAGTCCAGCATGAGGTACGGCGGCGGCGGGAGCTCGTCACGGCGAAGCAAGTCGATAGCAAGCCCCATGTTCATGAGATCATCCGGTTTGGGAACGGCGGGTTTTTCGTCAAGCCGGCTGAGGTGCGGTGATCCCGAGGCGCTGCTGTCACCGGAGAGGTTTAACAGAAGATGA 1206 0.5713 MMAPSHPPHQLHYHHWAPSPSPSPSPTPLVNKSSLSPSSKLPAVDFTPPLIAMVVVVATAFVVVTYSRLIARHLRPPIHRLLRRFRRRSFLPSSLSDVDSLPYESPFDGPHHVMFSPYGLDESVIKTIPFSLYTAKYDNRFEDSRRDCAVCLLEFEDDDYVRTLPVCSHTFHVDCIDAWLRSHANCPLCRAGVLCAQSPFTPMMAARIRPSLDDDAILHRINMEPILDAPLPPPSHSSFPEIVPCVDDHSPRRNNGNSEDRFNGRDFLLKRSYSFGFERSLASERMVMEPATASPWRYRRGSNSFWSKRPSPFGSLGKPRVFSFRYYRGMKSPFFRRRGFFPLSESSMRYGGGGSSSRRSKSIASPMFMRSSGLGTAGFSSSRLRCGDPEALLSPERFNRR 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4789g00009 401 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 111 194 IPR013083 -
Gabi4789g00009 401 ProSiteProfiles Zinc finger RING-type profile. 148 190 IPR001841 -
Gabi4789g00009 401 SUPERFAMILY RING/U-box 131 196 - -
Gabi4789g00009 401 CDD RING-H2_EL5-like 147 190 - -
Gabi4789g00009 401 PANTHER RING-H2 FINGER PROTEIN ATL16 34 215 IPR044600 GO:0016567|GO:0016740
Gabi4789g00009 401 MobiDBLite consensus disorder prediction 1 34 - -
Gabi4789g00009 401 SMART ring_2 148 189 IPR001841 -
Gabi4789g00009 401 FunFam RING-H2 finger protein ATL65 113 194 - -
Gabi4789g00009 401 Pfam Ring finger domain 147 190 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4789g00009 Gabi-Chr4789 77650 80019 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4789g00009 30 401 C3H Transcription Factor Family AT3G18930 51.358 5.17e-101 304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4789g00009 - K19041 gmx:100795347 569.696