Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4788g00001 ATGGCTGAATCCCAAAAGTCACTTGTGATTAAGCTTGGTGCAAAGCGTTCAAGAACGGTTCAAGAAGACTGCCCACAGACGGAGATCATCGCTGATCATCGTTCCAAGAAAATGAGAAAAGATGCTTTTGAAATTTCTCCGCCACTGAGAATGAACAGAACGACGGCTGAACATGAACACCGACCAACAAAGTGCAGAGTGCAAAGTGCAAGAGAAGGAAGGTGCTTCGGACCGGAAAACTCCAAAAGAATGTCAAGAGCAGCTTCCCAAATTTGTGAGTTGAAGAAGGAAGGTGCAGAGTGCAAGAAAGAGAAGAAACAAAGCATAGACAGATACAAAAAAATGCAATGTTGGGTGATCATGAAAAGGTTGAAGGAAGGAAGAGATGCTTGGGCTTTCAAAGAAGCTCTTGATGTTAAGGTCTTGGAGTTTCTTGATAACCCTGACTCTGTATCAAAGCCAATAGGTTTGAAGGATATTGAGGTCAAATTGAACCACTATCTGTATTCCAAACCTAAGGAATTTGCAGATGATATGAGGCTTGCATTTTCTTATGCATTGCTATACCCTTGGAGGAGTGAGATTCACATGATTGCAAGGAGGGGTAACAAGACAGTTGTTATTACAGATATGATAATCTCACTGACTGTTACTACTTTCACTGAGAGTTACTTCTTGATAAATCCAAATCTTAAAAGCATAAAGGAGCTAATTTACAAGAAGGGATATGCGAAAATAGATAAGCGAAAAGTTCCTTTGACGGATAATAACATCATTGAGCAGGAATTAGGAAAGTTTGGCATTGTATGCACAGAAGACATGGTGCATCAAATTGATAATGTTGGTCCGCACTTTAAGGAAGTTGTCAAATTTATGTGGCCCTTTGAACTCAACAAGCCAGCTGATGGATTAAAAGGATCAAAAACACTATACAAGGATGGTGGAGACACAGGGAGCCGTGAGGATCTCATCAATGAACTAATCAATAGAATGAATTAA 999 0.3994 MAESQKSLVIKLGAKRSRTVQEDCPQTEIIADHRSKKMRKDAFEISPPLRMNRTTAEHEHRPTKCRVQSAREGRCFGPENSKRMSRAASQICELKKEGAECKKEKKQSIDRYKKMQCWVIMKRLKEGRDAWAFKEALDVKVLEFLDNPDSVSKPIGLKDIEVKLNHYLYSKPKEFADDMRLAFSYALLYPWRSEIHMIARRGNKTVVITDMIISLTVTTFTESYFLINPNLKSIKELIYKKGYAKIDKRKVPLTDNNIIEQELGKFGIVCTEDMVHQIDNVGPHFKEVVKFMWPFELNKPADGLKGSKTLYKDGGDTGSREDLINELINRMN 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4788g00001 332 Gene3D - 230 292 - -
Gabi4788g00001 332 SMART bromo_6 108 213 IPR001487 GO:0005515
Gabi4788g00001 332 SUPERFAMILY Ribosomal protein L30p/L7e 228 332 IPR036919 -
Gabi4788g00001 332 Gene3D - 100 204 IPR036427 GO:0005515
Gabi4788g00001 332 ProSiteProfiles Bromodomain profile. 125 189 IPR001487 GO:0005515
Gabi4788g00001 332 CDD Ribosomal_L7_archeal_euk 229 332 IPR035808 -
Gabi4788g00001 332 Pfam Bromodomain 120 189 IPR001487 GO:0005515
Gabi4788g00001 332 SUPERFAMILY Bromodomain 103 200 IPR036427 GO:0005515
Gabi4788g00001 332 PANTHER 60S RIBOSOMAL PROTEIN L7 228 332 IPR039699 -
Gabi4788g00001 332 Gene3D - 229 327 IPR036919 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4788g00001 Gabi-Chr4788 4935 12208 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4788g00001 229 332 Cytoplasmic Ribosomal Protein Gene Family AT2G44120 57.692 2.13e-42 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4788g00001 K02937 - gmx:100500005 192.2