Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4787g00005 ATGGCAGGGCAAGAATCATTGTCGTCCTCTTCTTCCTTTAGCTATGGATGGAAATATGATGTTTTTCTTAGCTTCAGGGGTGAAGATACTCGTCACGGTTTTACTGGCAATCTCTACAAAGCTCTTCATGACAGGGGAATCCACACCTTCATTGATGATGAGGAGCTTCAAAGAGGAAAAGAAATCACATCATCACTTATCAATGCAATTGAAGAATCCAGGATTGCAATCACTGTGTTCTCTAAGAACTATGCTTCTTCTTCATTTTGCTTAGATGAACTTGCCCATATCCTTCACTTAATCAAGGAAAAGGGTCGGTTGGTTTTGCCTGTTTTTTATGACGTTGACCCTTCTCACGTGCGAAATCAGAGGGGTAGCTATGAAGAAGCAATGGCTAGTCATGAAGAGAGATTTAAGGACAACAAGGAGAAGGTGCAGAAATGGAGGATGGCTCTGCGTCATGCAGCTGACTTGTCTGGCTTTCATTTCAAATTCGGGAATGAGAATGAATATGAGTTTATCGGGAACATTGTTAAAGAAGTCTCCAACAAGATTAATCGTGCTCCTCTACATGTTGCGGATTATCCAGTTGGATTGGAATCTAAAGTGCTAGAAGTAAAATCACTTCTCAATGTCGGATCTGATGGAGTCCACATGATAGGGATCCATGGTATTGGGGGAATAGGAAAGACAACAGTTGCTCGAGCCGTTTATAATGCGATTGCTGATTCATTTGATGCTTTATGTTTTCTTGATAATGTGAGAGAAAATTCAATTAAGCATGGATTAGAACATCTTCAAGAGACACTTCTTTCTGAAATAGTTGGGGAGAAAGATATTAAGTTTGCAAGCGTCAATAAAGGAATTCCAATAATAAAGCACAGGCTCCACCGAATGAAAGTTCTTTTGGTTCTTGATGATGTTGACAAACTGGAGCAGTTGCGGGCAACTGTTGGAGGGCTTGATTGGTTTGGTTCTGGCAGCAAAATCATCATTACAACTAGGGACAAGCATTTGCTAACAAGTCATGGGGTTGAGGAAACTTATGAGGCAGATGGTTTGGATAATAAAGAAGCTCTTGAATTACTGAGTTGGAATGCTTTTAAAACTGACAAAGTTGATTCGAGTTATGTGGACATTTTAAACCGTGCAATAACTTATGCTTCTGGCCTTCCACTAGTATTGGAGATAATAGGTTCCTACTTGTTTGGGAAAAGGATAGAAGAATGGGAATCTGCATTAGATCAGTATAAGAGAATTCCTAATAAAGAGATCCAAAAGATACTTAAAGTGAGTTTCGATTCTTTGGAGGAATATGAGAAGAAATTTTTTCTTGACATTGCTTGTTGCTTCAAAGGAAATCATTTAGCACATATCAAAAAATTACTTTATGCTCATCACGGTTTCTGCCCAGAATATGGTATCGGAGTGTTAATTGAAAAATCTCTCATAAAGATTATGCATGGAGATGTAATATTGCATGACCTGATAGAGGACATGGGTAAAGAAATTGTCCGACAGGAAGCACCAGAAGAGCCTGGCAAACGTAGTAGATTATGGTCTCCTGATGATATAGTTCAAGTTTTACAAGATAATACGGGAACTAGTAGTATTCAAATAATAATGCTGGATTTCCTCAAATTTGAAGAAGTAGTTGAATGGGATGGAAATGCCTTCAAGGAGATGAAAAACCTCAAAACACTTATTATTAGAAAAGGTTGTTTTTCTGAAGGTCCCAAACATCTTCCAAATAGTTTGAGAGTACTGGAATGGTGGAGATATCCTTCACCATCTTTACCATCTAATTTTCATCAAAAGAAACTTGTGATACTGAAGTTACCCCAAAGTCACTCTATTTCAATTCATTTGCTCATGTCAAATAAGGAGTTTGTGAATATGAGACTTCTGAATTTTGATTACTGTAAATGTATAACAGAGATACCTGATGTGTCTGGTGTCCCAAATTTAGAAGAATTATCATTTAGATTTTGTGAGAATTTAATTAAAATTCACAAATCGGTTGGATTACTGAATAAAATTAAAATCTTGAACGCTGATGGTTGCGAGAAGTTTAGGAGTTTTCCACCCATCAGGTTGACCTCTCTTGAAAAACTCCAGCTTTCATTTTGTCCCAGTCTTGAGAATTTTCCAGAAATATTAGGAAAGATGGAAAAAATAACAGAGCTTAGTATTTTTTACACTCCCATACAAGAACTGCCATTTTCAATTCAAAATCTCACTCGGCTTCAAAGACTACAGCTGACACGTTATGGAGGAGTTGTTGAGTTACCAAGGAGCATTTCAATGATGCGAGAACTTAAGGAGTTGAGTGTTGAGGGATGTGAGGGATTGCTTATATCTAAACAGGACGAAGGTGATGCACAAGTGAGCTCATTGGTGTTTGAGAACACCTTGGAAATTATCATTTGGCGATGCAATATATCAGACAAATTCATAAGAAAAGGTCTCCCTTTGTTTGGCAATGTGCAACAGTTAAGCCTAGCCTATTGTAATCTCACAATTCTTCCTGCATGCATCAAAGAATGTCTCTTTTTGAGAGAAATTCTATTATATTGTTGTGAGAATTTCCAGGAAATTGGAGGGGTTCCACCCAACTTAGAAACATTCACTACAAGAGAGTGCACATCCTTGAAAGATTTAGACCTCACACTTTTTCCTGAATGTTTGATGAGACTTGTTTTGCATAAATGTCAGAATCTTCAAGAAATTAGAGGGATTTCACCCAACACAAGAACTTTCCTTGCAACAGAATGCCCGTTCTTGACTTCCAAGTGTAGAAGCATGTTACTGAATAAGGAATTGCACGAGAAGGGTGCAGACAAAGTGTTTCTTTTGCAAGGAACAAGGATTCCAGAGTGGTTTGGGTATAGTATCAATGGACTGTCAATTTCTTTCTGGTTTCGTAACAAGGTCCCTGCGATATCTCTATGTTTTGCTTGTGGATTCGATGGAAACTATGCCACTTATAGGCTCAATATTGAAGTCAACGGCATTTCAAAAGTTCTTTTTGATAAAGGAGAGGGTTTCTATTCTGGTTGCGCAGCAGGGTTTTATACAGTTCTGTTTGATGTGAAACAGGAAAATTTATTACTTGATACTGTTCTTCTAGAAGAAAATAAATGGAATTATGTGGTGTGTACTATATCAAAGAACGAAGAAAACAAAAAAACTTCGTTTTGCCAACAAAGTGGAATCCATGTATTCAAACAAGAAAGCAGCATGGAGGACATTCAATTCACCGATCCACTGTTGCTGGAAGAAGAGCATAGATTGGTGGACATGAAGATTCTCAAAGACAATTTATGCAGCATCTAA 3336 0.3774 MAGQESLSSSSSFSYGWKYDVFLSFRGEDTRHGFTGNLYKALHDRGIHTFIDDEELQRGKEITSSLINAIEESRIAITVFSKNYASSSFCLDELAHILHLIKEKGRLVLPVFYDVDPSHVRNQRGSYEEAMASHEERFKDNKEKVQKWRMALRHAADLSGFHFKFGNENEYEFIGNIVKEVSNKINRAPLHVADYPVGLESKVLEVKSLLNVGSDGVHMIGIHGIGGIGKTTVARAVYNAIADSFDALCFLDNVRENSIKHGLEHLQETLLSEIVGEKDIKFASVNKGIPIIKHRLHRMKVLLVLDDVDKLEQLRATVGGLDWFGSGSKIIITTRDKHLLTSHGVEETYEADGLDNKEALELLSWNAFKTDKVDSSYVDILNRAITYASGLPLVLEIIGSYLFGKRIEEWESALDQYKRIPNKEIQKILKVSFDSLEEYEKKFFLDIACCFKGNHLAHIKKLLYAHHGFCPEYGIGVLIEKSLIKIMHGDVILHDLIEDMGKEIVRQEAPEEPGKRSRLWSPDDIVQVLQDNTGTSSIQIIMLDFLKFEEVVEWDGNAFKEMKNLKTLIIRKGCFSEGPKHLPNSLRVLEWWRYPSPSLPSNFHQKKLVILKLPQSHSISIHLLMSNKEFVNMRLLNFDYCKCITEIPDVSGVPNLEELSFRFCENLIKIHKSVGLLNKIKILNADGCEKFRSFPPIRLTSLEKLQLSFCPSLENFPEILGKMEKITELSIFYTPIQELPFSIQNLTRLQRLQLTRYGGVVELPRSISMMRELKELSVEGCEGLLISKQDEGDAQVSSLVFENTLEIIIWRCNISDKFIRKGLPLFGNVQQLSLAYCNLTILPACIKECLFLREILLYCCENFQEIGGVPPNLETFTTRECTSLKDLDLTLFPECLMRLVLHKCQNLQEIRGISPNTRTFLATECPFLTSKCRSMLLNKELHEKGADKVFLLQGTRIPEWFGYSINGLSISFWFRNKVPAISLCFACGFDGNYATYRLNIEVNGISKVLFDKGEGFYSGCAAGFYTVLFDVKQENLLLDTVLLEENKWNYVVCTISKNEENKKTSFCQQSGIHVFKQESSMEDIQFTDPLLLEEEHRLVDMKILKDNLCSI 1111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4787g00005 1111 SMART till_3 18 158 IPR000157 GO:0007165
Gabi4787g00005 1111 Pfam TIR domain 18 188 IPR000157 GO:0007165
Gabi4787g00005 1111 SUPERFAMILY L domain-like 505 909 - -
Gabi4787g00005 1111 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 19 801 IPR044974 GO:0006952
Gabi4787g00005 1111 ProSiteProfiles TIR domain profile. 17 185 IPR000157 GO:0007165
Gabi4787g00005 1111 Gene3D - 353 437 IPR042197 -
Gabi4787g00005 1111 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 183 447 IPR027417 -
Gabi4787g00005 1111 Gene3D Ribonuclease Inhibitor 512 715 IPR032675 -
Gabi4787g00005 1111 Gene3D Ribonuclease Inhibitor 716 930 IPR032675 -
Gabi4787g00005 1111 Gene3D - 184 347 IPR027417 -
Gabi4787g00005 1111 Pfam NB-ARC domain 206 436 IPR002182 GO:0043531
Gabi4787g00005 1111 FunFam Disease resistance protein (TIR-NBS-LRR class) 15 187 - -
Gabi4787g00005 1111 SUPERFAMILY Toll/Interleukin receptor TIR domain 8 161 IPR035897 -
Gabi4787g00005 1111 Gene3D - 13 183 IPR035897 -
Gabi4787g00005 1111 PRINTS Disease resistance protein signature 697 713 - -
Gabi4787g00005 1111 PRINTS Disease resistance protein signature 219 234 - -
Gabi4787g00005 1111 PRINTS Disease resistance protein signature 388 402 - -
Gabi4787g00005 1111 PRINTS Disease resistance protein signature 295 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4787g00005 Gabi-Chr4787 72280 77091 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4787g00005 13 781 WRKY Transcription Factor Family AT4G12020 30.101 1.40e-86 306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4787g00005 - - gmx:121173697 1332.01