Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4787g00003 ATGGCAAGGCAAGAATCATTGTTGTCCTCTTCTTCCTTTAGCTATGGATGGAAATATGATGTTTTTCTGAGCTTCAGAGGCGAAGATACTCGTCACGGTTTCACCGGCTCTCTCTACAAAGCTCTTCGTGACAGGGGAATTCACACCTTCATTGATGATGAGAAGCTTCAAAGAGGAGCGAAAATCACAGCATCACTTGTCAAGGCTATTGAAGAATCAAGGATTGCCATCACTGTGTTCTCTAAGAACTATGCTTCTTCTGCATTTTGCTTAGACGAACTTCTCCATATCCTTCACTGCATCAAGGAAAAGGATCGGTTGGTTTTGCCTGTTTTTTATGACGTTGACCCTTCTCACGTGCGACATCAGAGGGGTAGCTATGAACAAGCACTCGCTGCTCATGAACAGAGGTTTAAGGATGACGTGGAGAAGGTGCAGAAATGGAGGATGGCTCTGCGTCATGCAGCTGACTTGTCTGGCTTTCATTTCAAACAACAAGGGAATGAGAATGAATATGAGTTTATTGGGAACATTGTTAAAGAGGTCTCCAAAAAAATTAATCGCGCTCCTTTACATGTAGCGGATTATCCAGTAGGATTGGAGTCTAAAGTGCTTAAAGTAATCTCACTTCTGAATGTGGGATCTGATGGAGTCCACATGATAGGGATCCATGGAATTGGGGGAATAGGGAAGACAACAGTTGCTCGGGCAATTTATAATGCCATTGCTGATTCATTTGAAGCTTTGTGTTTTCTTGATAATGTGAGAGAAAGTTCAATTAAGCATGGATTAGAACATCTTCAAGAGACACTTCTTTCAAAAATAGTTGGGGAGAAAGATATTGAGTTAGCAAGTGTCAAGGAAGGAATTCCAATAATAAAGCATAGGCTCCACGGAAAGAAGGTCCTTTTTGTTCTTGATGATGTTGACAAAGTAGAGCAGTTGCAGGCAACTATCGGAAGTCCTGATTGGTTTGGTTCTGGCAGTAGAATCATTATTACAACACGGGACAAGCATTTGCTAACAAGTCATGGGGTTGAGAAAACTTATGAGGTAGATGGGTTGAATAATAAAGAAGCTCTTGAATTGCTCGGTTGGAATGCTTTTAAAACTGACAAAGTTGATCCTAGTTATGTAGACATTTTGAAACGTGCAATAACTTATGCTTCCGGACTTCCATTGGCTTTGGAGGTAATAGGTTCCTACTTGTTTGGGAAAAGGACAGAAGAATGGGAATCTGCATTAGATCAGTATGAGAGAATTCCAAAAAAAGAAATCCAAAAGATACTTGAAGTAAGTTTTCATTCTTTGGAGGAATATGAACAGAAATTTTTTCTTGATATTGCTTGTTGTTTCAAAGGAAATGATTTAGCATATGTCAAAAAATTATTGCATGCTCATCATGGTTTCTGCCCAGAATATGGTATTGGAGTGTTGATTGAAAAATCTCTCATAAATATTAATGTATTTGGTCATGTAACATTGCATGACCTGATAGAGGACATGGGTAAAGAAATTGTCCGACAGGAAGCACCAGAGGAGCCTGGAAAACGTAGTAGATTATGGTTCCCCGATGATATAGTTCAAGTTTTAGAAGATAATAAGGGAACTAATAGTATTCAAATAATAATGCTGGATTTCCTCAAATTTGAAGAAGTAGTTGAATGGGATGGGAATGCCTTCAAGGAGATGAAAAACCTTAAAACACTTATTATTAGAAAAGGTTATTTTTCTGAAGGTCCCAAACATCTTCCAAATAGTTTGAGAGTACTAGAATGGTGGAGATATCCTTCACCATCTTTACCGTCTAATTTTCACCAAAAGAAACTTGTGATACTGAAGCTACCCCAAAGTCACTCTATTTCAATTCATTTGCTCATGTCAAATAAGGAGTTTGTGAATATGACAGTTCTGAATTTTGATTACTGTCAATGTATAACAGAGATACCAGATGTGTCTGGTGTCCCAAATTTAGAAGAATTATCATTTGGACATTGTGAGAATTTAATTAAAATTCACAAATCAGTTGGATTCTTGAATAAACTTAAAATCTTGGACGCTGAAGGTTGCAAGAAGTTTAAGAGTTTTCCACCCATCAAGTTGACCTCTCTTGAAGAACTCCATCTATCATGTTGTCCTAGTCTTGAGAATTTTCCAGAAATCTTAGGAAAGATGGAAAAAATAGCAAAGCTTAAATTAAGTGAAACTACCATAAAAGAACTGCCAGTTTCAATTCAAAATCTCACTCAGCTTAAAGGTCTAATGCTGACCCGTTGTGGAGTTGTAAAGTTACCAAGGAGCATTTCGATGATGCGAGAACTTAAATTGAGTGTTCAGGAATGTAAGGGATTGCTTATATCTAAGCAGGACGAAGGCGATGCACAAGTGAGCTCATTGGTGTTTGAGAACACCATTGTTGTTAACCTTTGGGAATGCAATATATCAGACGAATTCATTCGAAAAGAATTTTCGGGAAATTGGAGGGATTCCACCCAACTTAGAAACATTCTCTACAAGAAAGTCTCTACAAGAAAGTGCACATCCTTGAAAGATTTAGACCTCACACTATTTCCTGAATGTTTGACGACACTTTTTTTGTATAAGTGCGAGAATCTTCAAGAAATTAGAGGGATTTCACCGAACATGAGAAGTTTGCATGCAACAGAATGCCCATCTTTGACTTCCGAGTGTAGAAGAATGTTATTGAATGAGGAACTGCACAAGGAGGGTGGAGACAAAGTGTTTCTTTTGCCAGAAACAAGGATTCCAGAGTGGTTTGGGTATAGTATCAATGGATCATCAATTTCTTTCTGGTTTCGTAACAAGGTTCCTGCTATATCTCTATGCTTTGCTTTTCGACTCAAAGGAAATTATGCCACTTATAGGCTCAATATTGAAGTCAACGGCATTTCTGATATAGGAGAGGATTTCTATTCAGATTGCAAAGCAGGGGATTATACAGTTCTTTTTGATATGAAACAGGAAAAATTCTTACTTGATACTGTTCTTCTTGAAGAAAATAAATGGAATTATGTGGTGTGTACTATATCAAAGAGGAGCAAAGAAAACAAAAAAGCTTTGGTTATCAAACAAAGTGGAATCCATGTATTTGAACAAGGAAGCAGCATGGAGGACATTCAATTCACCGATCCACTGTTGCTGGAAGAAGAGCATGGATTGGTGGACATGAAGATTCTCAAAGACAATTTATGCAGCACCTAA 3222 0.3793 MARQESLLSSSSFSYGWKYDVFLSFRGEDTRHGFTGSLYKALRDRGIHTFIDDEKLQRGAKITASLVKAIEESRIAITVFSKNYASSAFCLDELLHILHCIKEKDRLVLPVFYDVDPSHVRHQRGSYEQALAAHEQRFKDDVEKVQKWRMALRHAADLSGFHFKQQGNENEYEFIGNIVKEVSKKINRAPLHVADYPVGLESKVLKVISLLNVGSDGVHMIGIHGIGGIGKTTVARAIYNAIADSFEALCFLDNVRESSIKHGLEHLQETLLSKIVGEKDIELASVKEGIPIIKHRLHGKKVLFVLDDVDKVEQLQATIGSPDWFGSGSRIIITTRDKHLLTSHGVEKTYEVDGLNNKEALELLGWNAFKTDKVDPSYVDILKRAITYASGLPLALEVIGSYLFGKRTEEWESALDQYERIPKKEIQKILEVSFHSLEEYEQKFFLDIACCFKGNDLAYVKKLLHAHHGFCPEYGIGVLIEKSLININVFGHVTLHDLIEDMGKEIVRQEAPEEPGKRSRLWFPDDIVQVLEDNKGTNSIQIIMLDFLKFEEVVEWDGNAFKEMKNLKTLIIRKGYFSEGPKHLPNSLRVLEWWRYPSPSLPSNFHQKKLVILKLPQSHSISIHLLMSNKEFVNMTVLNFDYCQCITEIPDVSGVPNLEELSFGHCENLIKIHKSVGFLNKLKILDAEGCKKFKSFPPIKLTSLEELHLSCCPSLENFPEILGKMEKIAKLKLSETTIKELPVSIQNLTQLKGLMLTRCGVVKLPRSISMMRELKLSVQECKGLLISKQDEGDAQVSSLVFENTIVVNLWECNISDEFIRKEFSGNWRDSTQLRNILYKKVSTRKCTSLKDLDLTLFPECLTTLFLYKCENLQEIRGISPNMRSLHATECPSLTSECRRMLLNEELHKEGGDKVFLLPETRIPEWFGYSINGSSISFWFRNKVPAISLCFAFRLKGNYATYRLNIEVNGISDIGEDFYSDCKAGDYTVLFDMKQEKFLLDTVLLEENKWNYVVCTISKRSKENKKALVIKQSGIHVFEQGSSMEDIQFTDPLLLEEEHGLVDMKILKDNLCST 1073
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4787g00003 1073 Gene3D Ribonuclease Inhibitor 525 901 IPR032675 -
Gabi4787g00003 1073 FunFam Disease resistance protein (TIR-NBS-LRR class) 15 188 - -
Gabi4787g00003 1073 Pfam TIR domain 18 188 IPR000157 GO:0007165
Gabi4787g00003 1073 Gene3D - 185 348 IPR027417 -
Gabi4787g00003 1073 Gene3D - 13 184 IPR035897 -
Gabi4787g00003 1073 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 19 720 IPR044974 GO:0006952
Gabi4787g00003 1073 SUPERFAMILY "Winged helix" DNA-binding domain 424 532 IPR036390 -
Gabi4787g00003 1073 ProSiteProfiles TIR domain profile. 17 186 IPR000157 GO:0007165
Gabi4787g00003 1073 SMART till_3 18 158 IPR000157 GO:0007165
Gabi4787g00003 1073 SUPERFAMILY Toll/Interleukin receptor TIR domain 9 161 IPR035897 -
Gabi4787g00003 1073 PRINTS Disease resistance protein signature 389 403 - -
Gabi4787g00003 1073 PRINTS Disease resistance protein signature 677 693 - -
Gabi4787g00003 1073 PRINTS Disease resistance protein signature 220 235 - -
Gabi4787g00003 1073 PRINTS Disease resistance protein signature 296 310 - -
Gabi4787g00003 1073 Pfam NB-ARC domain 203 435 IPR002182 GO:0043531
Gabi4787g00003 1073 Gene3D - 354 438 IPR042197 -
Gabi4787g00003 1073 SUPERFAMILY L domain-like 509 897 - -
Gabi4787g00003 1073 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 186 448 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4787g00003 Gabi-Chr4787 51033 57360 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4787g00003 13 784 WRKY Transcription Factor Family AT4G12020 30.429 1.49e-83 296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4787g00003 - - gmx:121173697 1151.73