Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4786g00011 ATGGCGAGGCGGAAGATCAAGATCAAGAAAATTGACAATGTAACGGCGAGGCAAGTGACCTTCTCTAAGAGGAGACGAGGGATCTTCAAGAAAGCTGAAGAGCTTTCTGTGCTGTGCGATGCTGAGGTTGGTCTTGTTATTTTCTCAGCTACTGGGAAGCTCTTTGAATATCCTAGCTCAAGCAATTGGCAAGTTAGGCATGGTAGACATTCATGCACCAACTTGAGGGGGAGTGTTAAAATCCAAGTAGAGAATAATAGCAACAACATTGAATTGAGTAAGGAAACTGCTGATAAAGCCCAGCAACTAAGGCGGATGAAAGGTGAGGATTTTCAAGGGCTAAACTTGGATGACTTGCAACAACTGGAGAGAACACTTGTAACAGGACTCAAGCGCGTGATTGAGACAAAGGAAAATCGGATTATGGACGAGATTGTTGCATTTCAGAATAAGGGAATCGAGTTAGAAGATGAGAACAAGCAGTTAAAGCAAAAGATGGCTATGCTGTGTAAGGAAAAAAGTTCTTTCCTGGTGGAGTCAGATATTGCCATGAAGGAAGTTGTCTCATCAGAATCTATGAATAATGTCTGCAGCTGCAACAGTGGCCCCTCTCTTGAGGATGATTCCTCTGACACATCTCTTAAGTTAGGGTTGCCCTTTCCTAATTAA 669 0.429 MARRKIKIKKIDNVTARQVTFSKRRRGIFKKAEELSVLCDAEVGLVIFSATGKLFEYPSSSNWQVRHGRHSCTNLRGSVKIQVENNSNNIELSKETADKAQQLRRMKGEDFQGLNLDDLQQLERTLVTGLKRVIETKENRIMDEIVAFQNKGIELEDENKQLKQKMAMLCKEKSSFLVESDIAMKEVVSSESMNNVCSCNSGPSLEDDSSDTSLKLGLPFPN 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4786g00011 222 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 174 - -
Gabi4786g00011 222 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Gabi4786g00011 222 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gabi4786g00011 222 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gabi4786g00011 222 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gabi4786g00011 222 MobiDBLite consensus disorder prediction 201 222 - -
Gabi4786g00011 222 Pfam K-box region 88 166 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gabi4786g00011 222 SUPERFAMILY SRF-like 3 73 IPR036879 GO:0003677|GO:0046983
Gabi4786g00011 222 CDD MADS_MEF2_like 2 65 IPR033896 GO:0000977|GO:0045944
Gabi4786g00011 222 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Gabi4786g00011 222 Gene3D - 13 78 IPR036879 GO:0003677|GO:0046983
Gabi4786g00011 222 ProSiteProfiles K-box domain profile. 82 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gabi4786g00011 222 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gabi4786g00011 222 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gabi4786g00011 222 Coils Coil 145 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4786g00011 Gabi-Chr4786 108759 118440 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4786g00011 1 220 MADS-box Gene Family AT2G22540 51.250 1.55e-72 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gabi4786g00011 K-box 4.6e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4786g00011 - - vvo:131620668 282.722