Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4786g00007 ATGGGTGGTGCACCTTCTTTCAAGCCATTCAACCTCACATTACCCTTCTTCCCTATCATCATCCTCACCATCACCACCCTCATTCTAATTGCAGGGGCTGACAATGATTCCAGCGAAGACCCTCCTCCACTTGAAGATAATAACGGTGCCACCACGCCACCCCAGGTTATGCCAGCGCCGGCTCATCGTCGGAAACCGGAGGGGCCCGTCAGGCCAAGCACCGCCGTAGTAATGGGCGTCTTGATCACCACGTTTTCTCTAACTTTCCTCCTCCTTCTCTACATTAAGCACTGCAATGGCGGGCACATCTTCACCGCAAGCGACCCAAATTCCCAAGGGGCCCCACCCTCTCATGAAAGGAAGAACTCCGGCATTGAACGCGCCGTAGTTGAATCGTTACCGGTTTTCAGATTCGGATCGCTGAGGGGACAAAAAGGCGGGCTCGATTGCGCGGTTTGTCTTGCAAGGTTCGAGGACATTGAGGTTCTCCGGTTGCTACCGAAATGCAAACACGCGTTCCACCTCGAATGTGTGGACACGTGGCTCGACGCGCATTCCACTTGCCCGCTTTGTCGCTACAAGGTCGACCCTGAAGACATTGTTCTGGTGGAGACGAAGGTTCCGCCGCCGCCACAACAAAACGAGGAGGAAGAAGTAATCGACATCGAGAGGGGAAGAAATAACAACAACAACGTTACAACACAACCAGACAATTTCAACTCGTCGGTGGGAGAGAGAGACGGTGAATTCTTACAGGTTATTTTGCAGACACCAAACGAACAGGGGCAGGAGGAGGGGAAGCAGGGACAGAACACGGAAACGTCGTCGTTGAGGAAAACAAAGAGCGAGGGCGTTGGGTGCTTTGTCCGTGCTCCCAGAAAAGACGGAACGTTATTGACACAAGACGGCGACAGGACAAGCGCGGAACACAGGTTAGAGCACCGTATCATTGTCTCCCCTGGTGGGCCCCACCACCAACAACAACGGTGGAGCGATGTTCACGCGTCTGATCTGCTGTACCTGACCTCAGAGATGATCATCAGCGACGCTCCTTCCACGCGCGGTGGAAGGAGAACCGTGCGGGAGCGCAACCGTAATGTCGAGGGCGAGATGGAGAACGGTGGGAGAGGAGTGATGAATTTGAGGAGTGTGTCGGCGATGACGGGGTTGAGCAGGTTCATGAGTAGGGAGAGAGAGAGGGAAGGACAGCGTGGTGGTGGTGGGGAAGAACAAGAGGGAGTGGTTTCGAGGTGGTTGGGTTGGATATCCAAGCCTCAGCCACGGGGAGATGTACGGTAG 1299 0.5466 MGGAPSFKPFNLTLPFFPIIILTITTLILIAGADNDSSEDPPPLEDNNGATTPPQVMPAPAHRRKPEGPVRPSTAVVMGVLITTFSLTFLLLLYIKHCNGGHIFTASDPNSQGAPPSHERKNSGIERAVVESLPVFRFGSLRGQKGGLDCAVCLARFEDIEVLRLLPKCKHAFHLECVDTWLDAHSTCPLCRYKVDPEDIVLVETKVPPPPQQNEEEEVIDIERGRNNNNNVTTQPDNFNSSVGERDGEFLQVILQTPNEQGQEEGKQGQNTETSSLRKTKSEGVGCFVRAPRKDGTLLTQDGDRTSAEHRLEHRIIVSPGGPHHQQQRWSDVHASDLLYLTSEMIISDAPSTRGGRRTVRERNRNVEGEMENGGRGVMNLRSVSAMTGLSRFMSREREREGQRGGGGEEQEGVVSRWLGWISKPQPRGDVR 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4786g00007 432 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 124 199 IPR013083 -
Gabi4786g00007 432 FunFam RING-H2 finger protein ATL43 125 199 - -
Gabi4786g00007 432 CDD RING-H2_EL5-like 149 192 - -
Gabi4786g00007 432 MobiDBLite consensus disorder prediction 393 432 - -
Gabi4786g00007 432 SMART ring_2 150 191 IPR001841 -
Gabi4786g00007 432 ProSiteProfiles Zinc finger RING-type profile. 150 192 IPR001841 -
Gabi4786g00007 432 MobiDBLite consensus disorder prediction 258 285 - -
Gabi4786g00007 432 MobiDBLite consensus disorder prediction 223 243 - -
Gabi4786g00007 432 MobiDBLite consensus disorder prediction 36 70 - -
Gabi4786g00007 432 MobiDBLite consensus disorder prediction 393 407 - -
Gabi4786g00007 432 MobiDBLite consensus disorder prediction 225 242 - -
Gabi4786g00007 432 Pfam Ring finger domain 149 192 IPR001841 -
Gabi4786g00007 432 SUPERFAMILY RING/U-box 132 197 - -
Gabi4786g00007 432 MobiDBLite consensus disorder prediction 258 281 - -
Gabi4786g00007 432 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 54 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4786g00007 Gabi-Chr4786 72741 74039 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4786g00007 72 421 C3H Transcription Factor Family AT5G05810 42.338 6.20e-76 241
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4786g00007 K19041 - cave:132189697 335.109