Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4779g00018 ATGGACAGCAGAACTGAGCACGCAGAAACTCACAGGAATAAGTGTGCAGCATGCTTTAGACAGTTCAACAAAATGGAGCACCTTGTGGAGCACATGAGGATCTCATGTCATTCTGATCATGAACCATCATGTGGCATTTGTGGGAAACACTGCAGGTCCTTTGAGTCTCTAAGGGAACATCTTCTTGGTCCACTACCAAAACAGGAATGCAGAGATATTTTTGCCAACCGAGGATGCAAGTTTTGCTTTAAAGTCCTTGATAACCAAAACTCAAGCACGTTCCACCAAGAAAGATGCAGAGTCTCTGGAATAAATGCTGAACTAAATGCGCGCTTTTCAAACTTGACCATTATTGATAATTTGATTATTGGTGGAAGGGGGCAACAAGTAGTTGCACTTGCTTGTAAAATGGTTGGTGGTGGCAGTGATGGCTCAATGGATCTTTGTGCAAGAGTATGCATAATTGATGAGCATGAAAACATCATTTTCCATTCTTATGTGAACCCACCAATTCCAGTCACAAACTATAGGTTTGAGATGACAGGTATTAGACCAGAATACTTGAGGGATGCAATGCCAACAAGGCAAGTGCAGAGGAGGATTCAAGATTTCCTATGCAATGGAGAACCTGTGTGGACAATTCGACCAAGAGGTGGAAATGCCAGGATTCTTGTGGGTCATGGTTTAGATCATGACTTGGAATGCTTGCAGATAGAATATAGAGCAGAAAAAATTAGGGACACTGCAAAATACCCTCCATTGATGAAGACAAGCAAGTTGAGCAACGCACTCAAGTACTTAACACAAGCGTATCTTGGGTATGACATTCAAATTGGGATACAGGATCCTTATGATGATTGTGTAGCAACAATGAGGCTCTACAACAGAATGAGATCTCAAGAACACAAAATAGAGTATTACCCTTTGAAATCTGACCCACAAAACAGGAATAGTTTTGCTTCATGGAGGCAAAGTGAGCTTGAGAAAATGACCCCCACACAAATGCTGGAAATCTCAAAATCCGATTACAATTGCTGGTGCTTGGATTCCTTATGTAGTACTTGA 1065 0.415 MDSRTEHAETHRNKCAACFRQFNKMEHLVEHMRISCHSDHEPSCGICGKHCRSFESLREHLLGPLPKQECRDIFANRGCKFCFKVLDNQNSSTFHQERCRVSGINAELNARFSNLTIIDNLIIGGRGQQVVALACKMVGGGSDGSMDLCARVCIIDEHENIIFHSYVNPPIPVTNYRFEMTGIRPEYLRDAMPTRQVQRRIQDFLCNGEPVWTIRPRGGNARILVGHGLDHDLECLQIEYRAEKIRDTAKYPPLMKTSKLSNALKYLTQAYLGYDIQIGIQDPYDDCVATMRLYNRMRSQEHKIEYYPLKSDPQNRNSFASWRQSELEKMTPTQMLEISKSDYNCWCLDSLCST 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4779g00018 354 FunFam RNA exonuclease 4 126 313 - -
Gabi4779g00018 354 Gene3D - 126 315 IPR036397 GO:0003676
Gabi4779g00018 354 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 17 344 IPR047021 GO:0004527
Gabi4779g00018 354 ProSitePatterns Zinc finger C2H2 type domain signature. 15 37 IPR013087 -
Gabi4779g00018 354 CDD REX4_like 131 295 IPR037431 GO:0006364|GO:0008408
Gabi4779g00018 354 Pfam Exonuclease 148 292 IPR013520 -
Gabi4779g00018 354 SUPERFAMILY Ribonuclease H-like 142 298 IPR012337 -
Gabi4779g00018 354 ProSiteProfiles Zinc finger C2H2 type domain profile. 13 42 IPR013087 -
Gabi4779g00018 354 SMART exoiiiendus 129 303 IPR013520 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4779g00018 Gabi-Chr4779 103516 107200 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4779g00018 1 351 C2H2 Transcription Factor Family AT3G27970 69.382 0.0 537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4779g00018 - - gmx:100813973 610.527