Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4779g00016 ATGGCATCTCACATAAAAGGTTTTTTCCGGGGATATTCCAATCGGTTCATTGCTTCGCGATTAGTCCGATTCGGAACGAGTTCCAGGATTAAGGCTTTAAACCACTCCCAAAGACGGTACTGGAATAGATTGAACACATATTCACACCCCCACTTGTTCAGTTCTCTAACTCCAACTGAACTACCATCATTTGGTTCTCACGTAAAAGCTTGGGTCTACACTGAATATGGGAATATAGAAGAGATTCTCAAATTTGATCCTAATGTAGCTATACCAGATATCAAGGAAGACCAAGTGCTTATAAAGGTTGTGGCTGCTGCCCTTAATCCTGTAGATAATTTGAGGGCTCTTGGGTATTTTAAGGACACTGACTCTCCTTTACCCACTGCTCCGGGGAATGATGTTGCTGGTGTGGTGGTAAGAGTGGGAAGTAAAGTGAGGAAATTTAAGATTGGTGATGAAGTTTATGGTGATATCAATGAACTTGCTGTGAACCATCCAAAAACCATTGGTTCTTTGGCAGAATATACTACTGCTGAAGAGAAAGTATTGGCTCATAAACCCTCCAATTTGAGCTTTGTTGAAGCTGCTAGCCTTCCTGTAGTGATCCTTACTGCTTATCTAGGACTTGAAAGAGTTGGGTTTTCTGCTGGCAAATCTATACTTGTTCTTGGAGGTTCTGGAGGAGTTGGAACCCTTGTTATTCAGCTGGCCAAACATGTTTTTGGAGCATCTAAGGTTGCAGCTACTGCTAGTACTCCAAAACTTGAATTGTTGAGGAGCTTGGGAGCAGACTTGCCTATTGATTATACAAAAGATAATTTTGAAGAATTGTCAGAAAAGTTTGATGTTGTGTATGATACAGTAGGACAGAGTGACAAGGCATTGAAGGCTATTAAAGAAGGGGGCAAAGTTGTGACCATAGTAGGACCTGCAACTCCACCAGCTATTCAGTTTTTTCTCACTGCAGATGGGGCTGTGTTGGAGAAACTACAACCTTACTTAGAGAGTGGCAAGGTGAAGCCAGTGTTGGACCCCAAGAGCCCCTTTCCGTTTTCTCAAACTGTGGAAGCATATGCATACCTTAAGACTAATAGAGCCATTGGAAAAGTAGTCATACATCCCATCCCATAA 1134 0.4206 MASHIKGFFRGYSNRFIASRLVRFGTSSRIKALNHSQRRYWNRLNTYSHPHLFSSLTPTELPSFGSHVKAWVYTEYGNIEEILKFDPNVAIPDIKEDQVLIKVVAAALNPVDNLRALGYFKDTDSPLPTAPGNDVAGVVVRVGSKVRKFKIGDEVYGDINELAVNHPKTIGSLAEYTTAEEKVLAHKPSNLSFVEAASLPVVILTAYLGLERVGFSAGKSILVLGGSGGVGTLVIQLAKHVFGASKVAATASTPKLELLRSLGADLPIDYTKDNFEELSEKFDVVYDTVGQSDKALKAIKEGGKVVTIVGPATPPAIQFFLTADGAVLEKLQPYLESGKVKPVLDPKSPFPFSQTVEAYAYLKTNRAIGKVVIHPIP 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4779g00016 377 CDD MDR_like_2 69 373 - -
Gabi4779g00016 377 Pfam Zinc-binding dehydrogenase 262 373 - -
Gabi4779g00016 377 SMART PKS_ER_names_mod 77 373 IPR020843 GO:0016491
Gabi4779g00016 377 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 191 343 IPR036291 -
Gabi4779g00016 377 ProSitePatterns Quinone oxidoreductase / zeta-crystallin signature. 218 239 IPR002364 GO:0008270|GO:0016491
Gabi4779g00016 377 PANTHER NADPH-DEPENDENT ALKENAL/ONE OXIDOREDUCTASE, CHLOROPLASTIC 64 377 IPR044626 GO:0016628
Gabi4779g00016 377 Gene3D - 75 373 - -
Gabi4779g00016 377 Pfam Alcohol dehydrogenase GroES-like domain 97 158 IPR013154 -
Gabi4779g00016 377 Gene3D - 210 324 - -
Gabi4779g00016 377 SUPERFAMILY GroES-like 68 225 IPR011032 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4779g00016 Gabi-Chr4779 87050 88524 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4779g00016 96 320 Monolignol Biosynthesis Gene Families AT4G37980 25.490 7.13e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4779g00016 K18980 - gmx:100791274 526.554