Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4778g00002 ATGCCGGAGCTTCGTAGTGGAGTGCGACGTGGTCGTGCTGCGGTAGGTCAGAAAGGGTCGGAACCGGCGAGGAAGAACGTGAAGACTCGTGCTGCGGTCGCGGCGGCGCCGGAGAAGGGAAGGCCGAGGACTAGATTGGCGGCGAAGAAATTGGAGCGTGAGAAGCCGTTAATCGTGATATCGGAGCCTGATAGTAATATAGAACGGGCTAAGGCGAAGAAGAATAAGGAAGAAGGTGAAGGCGTGATGGGTGATGAAAGTGGAGGCTTGAGTGCTAATAAGGGTGTTGCCCCAGAGGATGATGCGAACACTCCACCTTTTCCTGAGAGGGTTCAAGTTGGAGGATCCCCTATGTACAAGATAGAGAGGAAACTGGGTAAAGGTGGATTTGGTCAGGTTTTTGTTGGCCGCCGTGAGCGTGCTACCGGCCCTGGAGCTATGGAGGTGGCTCTGAAATTTGAACATAGAAACAGTAAGGGATGTAACTATGGCCCTCCTTATGAGTGGCAAGTGTACAACACCCTTGGTGGTAATCATGGAATACCTAAAGTACACTACAAAGGAAGACAAGGAGAATATTACATAATGGTTATGGACATGCTTGGTCCAAGTTTGTGGGATGTCTGGAATTCCTCAAGCCAGACGATGTCTGCTGAAATGGTCTCTTGTATAGCTGTTGAGTCCTTATCAATACTTGAGAAGATGCACTCCAAAGGTTATGTACATGGAGATGTAAAGCCAGAAAACTTTTTACTAGGTCAGCCAGCTACAGCGCAAGAGAAGAAACTGTTTCTTGTTGACCTTGGATTAGCTACAAAGTGGAGAGACTCCTCCTCTGGACAGCATGTTGAATATGATCAACGCCCTGATATGTTTAGAGGAACTGTTCGGTATGCTAGTGTTCACGCTCATTTGGGAAGAACGGCTAGTAGAAGGGATGATCTTGAATCTCTTGCGTACACACTCATCTTTCTTCATAGGGGCCGATTACCATGGCAAGGTTACCAGGGTGATACCAAATCCTTCCAAGTTTGCAAAAAGAAAATGGGAACATCTCCTGAGATGTTGTGCTGCTTTTGCCCTGCTCCTTTTAGGCAATTTCTTGAGACTGTAGTGAACATGAAATTTGATGAAGAACCTAACTATTCCAAGCTAATATCTTTGTTTGATGGTATAATTGGACCCAATCCAGCATTGCGGCCAATTAATACCGAAGGCGCTCAAAAGGTAATCATTCAGGTTGGGCAAAAGCGGGGTAGATTGAATATTGAGGAAGAGGATGATTCACAGCCCAAAAAGAAGGTTCGTTTAGGGGTTCCTGCTACACAATGGATTTCAGTTTATAATGCAAGACTACCGATGAAACAGAGGTATCATTACAATGTGGCTGATTCAAGATTAGCACAGCATGTTGATAGAGGGATTGCAGATGGCCTTCTTATCAGTTGCGTGTCTTCTTGTTCCAATCTTTGGGCACTTATTATGGATGCTGGAACGGGTTTTACTTCTCAAGTTTACAAGTTGTCACCTTTTTTCTTACACAAGGAATGGATCATGGAGCAGTGGGATAAGAATTATTACATTACTTCTATTGCAGGGGCCAATAATAGCAGTTCTCTTGTGGTGATGTCAAAAGGTACGCAGTATACTCAACAATCATACAAAGTAAGCGACTCTTTCCCCTTCAAATGGATAAACAAGAAGTGGAGAGAAGGTTTCCATGTCACCTCAATGGCTACTGCAGGAAGTCGTTGGGGTGTTGTTATGTCTCGCAATGCTGGATTCAGTGATCAGGTGGTCGAACTTGATTTTCTCTATCCAAGTGAGGGCATCCATAGACGTTGGGATGGTGGTTATAGGATTACAGCAACTGCAGCTACATGGGATCAATCTGCTCTAATATTAAGTATTCCAAGGCGCAGGCCTGGTGATGAAACTCAGGAAACTCTGCGTACATCACAATTTCCCAGCACACATGTTAAGGAAAAATGGTCAAAAAACCTTTATCTTGCCTGCTTGTGCTATGGGCGCACAGTATGCTGA 2043 0.4508 MPELRSGVRRGRAAVGQKGSEPARKNVKTRAAVAAAPEKGRPRTRLAAKKLEREKPLIVISEPDSNIERAKAKKNKEEGEGVMGDESGGLSANKGVAPEDDANTPPFPERVQVGGSPMYKIERKLGKGGFGQVFVGRRERATGPGAMEVALKFEHRNSKGCNYGPPYEWQVYNTLGGNHGIPKVHYKGRQGEYYIMVMDMLGPSLWDVWNSSSQTMSAEMVSCIAVESLSILEKMHSKGYVHGDVKPENFLLGQPATAQEKKLFLVDLGLATKWRDSSSGQHVEYDQRPDMFRGTVRYASVHAHLGRTASRRDDLESLAYTLIFLHRGRLPWQGYQGDTKSFQVCKKKMGTSPEMLCCFCPAPFRQFLETVVNMKFDEEPNYSKLISLFDGIIGPNPALRPINTEGAQKVIIQVGQKRGRLNIEEEDDSQPKKKVRLGVPATQWISVYNARLPMKQRYHYNVADSRLAQHVDRGIADGLLISCVSSCSNLWALIMDAGTGFTSQVYKLSPFFLHKEWIMEQWDKNYYITSIAGANNSSSLVVMSKGTQYTQQSYKVSDSFPFKWINKKWREGFHVTSMATAGSRWGVVMSRNAGFSDQVVELDFLYPSEGIHRRWDGGYRITATAATWDQSALILSIPRRRPGDETQETLRTSQFPSTHVKEKWSKNLYLACLCYGRTVC 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4778g00002 680 SMART serkin_6 119 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4778g00002 680 SUPERFAMILY Protein kinase-like (PK-like) 119 397 IPR011009 -
Gabi4778g00002 680 ProSiteProfiles Protein kinase domain profile. 119 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4778g00002 680 FunFam casein kinase 1-like protein HD16 92 436 - -
Gabi4778g00002 680 Gene3D Transferase(Phosphotransferase) domain 1 99 436 - -
Gabi4778g00002 680 MobiDBLite consensus disorder prediction 68 113 - -
Gabi4778g00002 680 ProSitePatterns Serine/Threonine protein kinases active-site signature. 240 252 IPR008271 GO:0004672|GO:0006468
Gabi4778g00002 680 MobiDBLite consensus disorder prediction 68 83 - -
Gabi4778g00002 680 PANTHER CASEIN KINASE-RELATED 113 642 - -
Gabi4778g00002 680 ProSitePatterns Protein kinases ATP-binding region signature. 125 152 IPR017441 GO:0005524
Gabi4778g00002 680 CDD STKc_CK1 118 389 - -
Gabi4778g00002 680 MobiDBLite consensus disorder prediction 1 50 - -
Gabi4778g00002 680 Pfam Protein kinase domain 119 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4778g00002 Gabi-Chr4778 29976 35376 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4778g00002 232 389 MAP Kinase Kinase Kinase AT5G50180 25.000 9.99e-08 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Gabi4778g00002 Pkinase 4.1e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4778g00002 - - gmx:100819969 1209.9