Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4776g00005 ATGAAAGAGGAGTCAACAGGACTGATTATTGGGGTTTCCATAGGTGTGGTTATTGGAGTTGTTTTAGCAATTTTTGCACTCTTCTGCCATAGGTTGCATCGAAATCGTTCACAGATAGGCAATAGCAGTTCCAGGAGGGCTGCAACCATACCCATCCGCACAAATGGTGCTGATTCTTGTACTATTCTATCAGACTCAACCTTAGGTCCAGAATCTCCTGTAAAATCAGGACGGAATGACATGTCCTTCTGGCATGATGGGTCTAGGAAGAGTAACATGGTTTCAGCATCTGGACTACCTGAATATGCATACAAGGATTTGCAGAAGGCAACACATGATTTTACAACAGTCATAGGACAAGGTGCATTTGGTCCTGTTTATAAAGCTCAGATGCCTACTGGCGAGACTGTTGCAGTTAAAGTTCTTGCAACTAATTCTAAGCAAGGGGAGAAAGAATTTCAAACAGAGGTTATGTTGCTGGGAAGGTTACACCATAGAAATCTGGTTAATTTGATCGGATATTGTGCAGAAAAGGGGCAACATATGCTTGTATATGTCTACATGAGTAAGGGTAGCTTGGCTTCCCACTTGTATAGTGATGTGAATGAAGCACTGAGCTGGGATTTGAGGGTTCAAATAGCTTTAGATGTGGCAAGAGGCTTGGAGTATCTTCATGACGGAGCAGTTCCTCCTGTAATCCATCGAGATATCAAATCTTCCAATATTCTATTGGACCAATCCATGCTAGCCAGGGTTGCTGATTTTGGACTTTCTAGAGAAGAGATGGTGGATAAACATGTAGCTCTTCGGGGTACCTTTGGCTATCTTGACCCCGAGTATATATCTTCAGGGAAATTCACCAAGAAAAGTGATGTATACAGTTTTGGGGTGTTGCTCTTTGAAATTATAGCCGGCAGAAACCCTCAGCAGGGTCTAATGGAATACGTTGAGCTTGCAGCAATGAATAATGAGGAAAAAGTTGGTTGGGAGGAAATTGTGGATTCTCGCCTTGAAGGAAACTTTGATGTTCAAGAACTGAATGAGGTAGCAGCCATTGCCTACAAATGCATCAACCGCGCCCCAAGGAAGCGCCCTTATATGAGGGACATAGTGCAAGTGTTAACAAGTATCCTTAAGTCAAGGCACCATAGGCATTATCATCACAAGAACTCCTTGTCAAGCATAGCAGATGAAGTTTGCATTGATCCTAATCAGCCAGAAACCAAGATTCCTCACCAGAGAGAAGAATCTATTGATAGTGCAGCAGATACATATGAAGTGTAG 1284 0.4268 MKEESTGLIIGVSIGVVIGVVLAIFALFCHRLHRNRSQIGNSSSRRAATIPIRTNGADSCTILSDSTLGPESPVKSGRNDMSFWHDGSRKSNMVSASGLPEYAYKDLQKATHDFTTVIGQGAFGPVYKAQMPTGETVAVKVLATNSKQGEKEFQTEVMLLGRLHHRNLVNLIGYCAEKGQHMLVYVYMSKGSLASHLYSDVNEALSWDLRVQIALDVARGLEYLHDGAVPPVIHRDIKSSNILLDQSMLARVADFGLSREEMVDKHVALRGTFGYLDPEYISSGKFTKKSDVYSFGVLLFEIIAGRNPQQGLMEYVELAAMNNEEKVGWEEIVDSRLEGNFDVQELNEVAAIAYKCINRAPRKRPYMRDIVQVLTSILKSRHHRHYHHKNSLSSIADEVCIDPNQPETKIPHQREESIDSAADTYEV 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4776g00005 427 SUPERFAMILY Protein kinase-like (PK-like) 90 374 IPR011009 -
Gabi4776g00005 427 SMART serkin_6 112 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4776g00005 427 Pfam Protein tyrosine and serine/threonine kinase 115 374 IPR001245 GO:0004672|GO:0006468
Gabi4776g00005 427 PANTHER OS01G0750732 PROTEIN 4 393 - -
Gabi4776g00005 427 FunFam Calcium/calmodulin-regulated receptor-like kinase 1 85 187 - -
Gabi4776g00005 427 ProSiteProfiles Protein kinase domain profile. 112 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4776g00005 427 CDD STKc_IRAK 118 377 - -
Gabi4776g00005 427 FunFam calcium/calmodulin-regulated receptor-like kinase 1 188 397 - -
Gabi4776g00005 427 MobiDBLite consensus disorder prediction 403 427 - -
Gabi4776g00005 427 ProSitePatterns Serine/Threonine protein kinases active-site signature. 232 244 IPR008271 GO:0004672|GO:0006468
Gabi4776g00005 427 Gene3D Phosphorylase Kinase; domain 1 79 187 - -
Gabi4776g00005 427 Gene3D Transferase(Phosphotransferase) domain 1 188 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4776g00005 Gabi-Chr4776 70004 74227 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4776g00005 70 374 Glycoside Hydrolase AT3G07070 42.547 1.14e-74 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-2 Gabi4776g00005 PK_Tyr_Ser-Thr 9.3e-54 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4776g00005 - - gmx:100786710 699.508