Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4774g00001 ATGGTAGGATCAGAGAATTGTACTGAAGAAATTGATCAGCAAGAAGAACAAGATGACTTTGCTGTGACCAAAAGATCTTATGATTGCACAATCTGCAAGAGAGGCTTCACTAATGCTCGTGCCTTAGGAGGTCACATGAATATCCACAGGAAAGAGAGAATCAAGGCCAAGCAATGCAAACCAAAATCTTCACTATCCAACAACTTTACCAACGAGGAACACTTGAGATATATTTTGGAGTCTCAGAGGAACGATGGCATGTATATTCAGACATCAAAACCTAACCCTAGAAACCACTACCCACCTGCATATACCATTCAATATGAGTTTCTTAACACAAAGTCTGAGTCTTTGATACGGAACCAAGAGCTGCTGGGTACCAATTTGAGTTTCCAAATTGGTTCAAGTCATGTGGATACGGATCAAGTTATGAGAGGAATCGTGAAAGATGGTGAAGGGGTGGACTTAGAGCTCAGGCTTGGTCATAATTCATACTCAAACTACTAA 507 0.4063 MVGSENCTEEIDQQEEQDDFAVTKRSYDCTICKRGFTNARALGGHMNIHRKERIKAKQCKPKSSLSNNFTNEEHLRYILESQRNDGMYIQTSKPNPRNHYPPAYTIQYEFLNTKSESLIRNQELLGTNLSFQIGSSHVDTDQVMRGIVKDGEGVDLELRLGHNSYSNY 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4774g00001 168 ProSiteProfiles Zinc finger C2H2 type domain profile. 27 54 IPR013087 -
Gabi4774g00001 168 ProSitePatterns Zinc finger C2H2 type domain signature. 29 49 IPR013087 -
Gabi4774g00001 168 PANTHER OS07G0101800 PROTEIN 15 163 - -
Gabi4774g00001 168 SUPERFAMILY beta-beta-alpha zinc fingers 24 54 IPR036236 -
Gabi4774g00001 168 Gene3D Classic Zinc Finger 4 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4774g00001 Gabi-Chr4774 25109 25615 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4774g00001 4 58 C2H2 Transcription Factor Family AT3G09290 49.123 2.62e-13 62.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi4774g00001 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4774g00001 - - mtr:25483021 186.037