Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4766g00094 ATGTCAAACATCACAAATTGTGATAGTGGGAGCTTCTCTACAGAGAATACCGGAGAAGACGCAGTTAAACAGCAATCAGAGATACTTGGTCAGTTCCATAGTCCAAATTCTCATGCTTCAACTACAACAAATAATAGTAATGGGTCAAACACAAATTCACAACTACCTCCACCAGTTAAGAAGAAAAGAAGCCTACCAGGAAATCCAGATCCAAGTGCTGAAGTCATAGCTCTATCGCCAAACTCCCTCGTGGCCACAAACCGATTCATATGTGAAATCTGCGACAAAGGGTTTCGAAGGGACCAGAACCTTCAGTTGCACCGGCGAGGTCATAACTTGCCATGGAAGCTTAAACAGAGAGCCGGCACTGAAGTTCGAAAAAGGGTTTATGTTTGTCCAGAAGCCTCATGTGTCCACCACAACCCAGCTCGAGCACTAGGCGATCTTACTGGCATTAAAAAGCACTTTAGCAGAAAGCACGGCGAGAAGAAGTGGAAATGTGATAAATGCTCAAAGAAATACGCCGTCCAATGCGACTGGAAAGCCCATTCAAAAATATGTGGTACAAAGGAATACAAATGTGACTGTGGCACTATCTTTTCCAGAAGAGATAGCTTCATCACCCACAGAGCTTTCTGTGATGCACTAGCTGAGGAGAATAAAAAAGTCAACGAAGAAGACCTTTCAAATATGGGTAATTCAAACATGCAGGGCCAACCAATACCAAACCAAGTTGCATCGTCATTACCAATCAACACCAATCTCAACCCACAGATTGCGACGTCCGAATTCAACAACAACTCAGATCGCAAACACCCATTATCATCACTCCCTCAAACAGTACTCATGACGACATCAATGCCAGCAACAAGACCCTTTAACAACAACATGGCTGGAGCTGTATTCACAGGAAGCCTTTCATCCAGTTCTTCTCTCCCTCTTCAACTGAGTAATTCGAACATGTCAGAGGAAAATGGGCTCCATTTAGCTGCAGGTTTACCTCACATGTCTGCTACTGCATTGCTGCAAAAAGCTGCACAATTGGGCGCTACCGTGAGTGATAATAATACCAATGGCATGATCACGGGAAAAAGTTTTGTCACAAGCATGGCACCACCATCATTTGGTGAGACACAACAACAGTTATATGGGATCATGAACCAGTACATGCACAATGGTCAACAGGACTTTTCTTCTCAGTATAATTTCAATGCGAATGGGATGGATGGTGGTAGCGTTGGAATGAGTGGTTTGGATATGTTTAATGCTATATTGGATCAAAGTAAGGCCTTATCAAAGATCATAGAGCAGAACAGTAGAAGTAGTGATAGTGTTTTTAGGTCAAGTAGTACCATCAATATTGTTGATGGAACTAAAGGAAGTGAAGATGTAATGACTTTGGACTTGCTGGGGATCGGAGGAGGAGGAGGAGGTGGTGGTGGTGGTGGTGCACATGGTGATTTGTATGGCGGAGCCCAACCGTCAGAAACGGATGCAAGAGATGAGATATGGAGAAATTGGTCAAACAACAACTCAGGCTTTGAATCATTTTCAGCAACTTAA 1563 0.4338 MSNITNCDSGSFSTENTGEDAVKQQSEILGQFHSPNSHASTTTNNSNGSNTNSQLPPPVKKKRSLPGNPDPSAEVIALSPNSLVATNRFICEICDKGFRRDQNLQLHRRGHNLPWKLKQRAGTEVRKRVYVCPEASCVHHNPARALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQCDWKAHSKICGTKEYKCDCGTIFSRRDSFITHRAFCDALAEENKKVNEEDLSNMGNSNMQGQPIPNQVASSLPINTNLNPQIATSEFNNNSDRKHPLSSLPQTVLMTTSMPATRPFNNNMAGAVFTGSLSSSSSLPLQLSNSNMSEENGLHLAAGLPHMSATALLQKAAQLGATVSDNNTNGMITGKSFVTSMAPPSFGETQQQLYGIMNQYMHNGQQDFSSQYNFNANGMDGGSVGMSGLDMFNAILDQSKALSKIIEQNSRSSDSVFRSSSTINIVDGTKGSEDVMTLDLLGIGGGGGGGGGGGAHGDLYGGAQPSETDARDEIWRNWSNNNSGFESFSAT 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4766g00094 520 Gene3D Classic Zinc Finger 143 224 - -
Gabi4766g00094 520 MobiDBLite consensus disorder prediction 1 58 - -
Gabi4766g00094 520 FunFam protein indeterminate-domain 12-like 68 136 - -
Gabi4766g00094 520 SUPERFAMILY beta-beta-alpha zinc fingers 88 185 IPR036236 -
Gabi4766g00094 520 ProSiteProfiles Zinc finger C2H2 type domain profile. 89 111 IPR013087 -
Gabi4766g00094 520 Gene3D Classic Zinc Finger 88 112 - -
Gabi4766g00094 520 ProSitePatterns Zinc finger C2H2 type domain signature. 91 111 IPR013087 -
Gabi4766g00094 520 SMART c2h2final6 130 160 IPR013087 -
Gabi4766g00094 520 SMART c2h2final6 89 111 IPR013087 -
Gabi4766g00094 520 SMART c2h2final6 165 185 IPR013087 -
Gabi4766g00094 520 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 40 481 IPR031140 -
Gabi4766g00094 520 Pfam Zinc finger, C2H2 type 89 111 IPR013087 -
Gabi4766g00094 520 MobiDBLite consensus disorder prediction 1 72 - -
Gabi4766g00094 520 FunFam protein indeterminate-domain 5, chloroplastic-like 143 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4766g00094 Gabi-Chr4766 930375 934192 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4766g00094 49 353 IDZ Gene Family AT3G50700 55.162 4.87e-113 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi4766g00094 zf-C2H2 0.0018 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4766g00094 - - gmx:100785295 687.182