Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4766g00089 ATGGAAATGTTTGCTTCAGTAGCGGATACAGGATGTGAGGGCACTGGTGCTTCAGGACCCATTTGGATTCCAAAGCGCTTTGTCTGGCCTTATGGTGGAAGAAGGGTATTTCTAAGTGGTTCTTTCACGAGATGGTCACAACATATACCTATGTCTCCGATGGAGGGATGCCCTGCAGTGTTTCAAGTTATTTGCAGCTTAATGCCGGGATATCACCAGTATAAATTTAACGTGGATGGGGAGTGGCGGCATGATGAGCAGCAGCCATTTGTAAGTGGGAACTATGGAGTAGTGAATACTATTTATTTAGTGAGAGAACCAGATATTTTACCTCCCATCTTAAGTGCTGAAACACCCGGTAGATCCCGCATGGAGGTTGATAATGATGTCTTTGGGCATGTGGAAGGTAATCCAAGGATGTCAGAGTCTGATCTTGAGGTCTCTCGCCACCGTATATCAGTATTCTTGTCTACATCTACTGCTTATGATTTGCTTCCTGAGTCAGGAAAGGTCATTGCCTTGGATATAAATTTACCTGTTAAGCAAGCATTCCATGTTCTCTATGAACAGGGTGTATCTATGGCTCCTCTATGGGACTTTTACAAGAGTCGGTTTGTTGGAGTGCTTAGTGCAATGGACTTCATTCTAATATTGAAAGAGCTGGGGAATCATGGATCAAATTTGACTGAAGAACAACTTGAGACTCATACTATAGCAGCTTGGAAAGAGGGAAAATTACAGCAACGCGGAACGCTTGATAGTAATGGGGGATCATATCCACTTCGTTTTGTTCATGCTGGGCCCCATGAATGTCTAAAAGATGTGGCTTTGAAAGTTTTGCAAAACAAGGTGTCGACGGTTCCTATCATCCATTCTTCTTCAGAGGATGGTTCATTTCCTCAACTGCTACATCTTGCTTCCCTGTCAGGAATACTAAAATGTATATGCAGGCATTTTAAGCACTCCTCTGGTTCTTTGCCAATTCTTCAACTTCCGGTTGGTTCAATACCTTTGGGTACATGGGTGCCTAAAGTTGGGGAACCAAATGGACAACCACTTGCAATGCTAAGGCCAAATGCTTCTCTTGGTGCTGCTCTGTCTATGTTTATTCAAGCTGAAGTTAGCTCAATACCAATAGTGGACGATAATGATTCATTGCTTGACATATATACAAGAAGCGATATTACAGCATTGGCTAAAGATAAAGCTTATGCTCGGATATCTCTCGATGAAATTAGTATTCATCAGGCATTGCTTCTGGGACAAGATGCAAATTCTCCTTATGGGCTTTACAATGGCCACAGATGTCATATGTGTTTGAGGTCTGATTCGTTGCACAAAGTGATGGAGCGGTTGGCTAATCCTGGGGTTAGGAGACTTGTGATTGTGGAGGCTGGCAGCAAGCGCGTGGAAGGGATTATTTCCTTAAGTGACGTGTTCAGATTCTTGTTAGGCTAG 1458 0.4314 MEMFASVADTGCEGTGASGPIWIPKRFVWPYGGRRVFLSGSFTRWSQHIPMSPMEGCPAVFQVICSLMPGYHQYKFNVDGEWRHDEQQPFVSGNYGVVNTIYLVREPDILPPILSAETPGRSRMEVDNDVFGHVEGNPRMSESDLEVSRHRISVFLSTSTAYDLLPESGKVIALDINLPVKQAFHVLYEQGVSMAPLWDFYKSRFVGVLSAMDFILILKELGNHGSNLTEEQLETHTIAAWKEGKLQQRGTLDSNGGSYPLRFVHAGPHECLKDVALKVLQNKVSTVPIIHSSSEDGSFPQLLHLASLSGILKCICRHFKHSSGSLPILQLPVGSIPLGTWVPKVGEPNGQPLAMLRPNASLGAALSMFIQAEVSSIPIVDDNDSLLDIYTRSDITALAKDKAYARISLDEISIHQALLLGQDANSPYGLYNGHRCHMCLRSDSLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4766g00089 485 SMART cbs_1 170 219 IPR000644 -
Gabi4766g00089 485 SMART cbs_1 352 400 IPR000644 -
Gabi4766g00089 485 SMART cbs_1 435 484 IPR000644 -
Gabi4766g00089 485 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 141 483 - -
Gabi4766g00089 485 CDD E_set_AMPKbeta_like_N 26 104 - -
Gabi4766g00089 485 ProSiteProfiles CBS domain profile. 348 406 IPR000644 -
Gabi4766g00089 485 Gene3D Immunoglobulins 23 110 IPR013783 -
Gabi4766g00089 485 Pfam Glycogen recognition site of AMP-activated protein kinase 23 108 IPR032640 -
Gabi4766g00089 485 SUPERFAMILY CBS-domain pair 351 484 IPR046342 -
Gabi4766g00089 485 SUPERFAMILY CBS-domain pair 150 321 IPR046342 -
Gabi4766g00089 485 FunFam Sucrose nonfermenting 4-like protein 20 104 - -
Gabi4766g00089 485 Pfam CBS domain 352 396 IPR000644 -
Gabi4766g00089 485 Pfam CBS domain 436 484 IPR000644 -
Gabi4766g00089 485 Gene3D - 141 324 IPR046342 -
Gabi4766g00089 485 Gene3D - 332 485 IPR046342 -
Gabi4766g00089 485 ProSiteProfiles CBS domain profile. 164 226 IPR000644 -
Gabi4766g00089 485 SUPERFAMILY E set domains 23 105 IPR014756 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4766g00089 Gabi-Chr4766 870804 879155 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4766g00089 32 94 Protein tyrosine phosphatase (PTP) family AT3G52180 37.500 3.78e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4766g00089 - - gmx:100778117 848.966