Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4766g00088 ATGGCACCAACAAGGAATCCTAGAAGTATGAATAAGCGGTTTTCAAGTTTAAATGAGGTCTCTCCTGAGAAAGACGGAGTTAACTCAAATAAAAATAAGCAACGGAAGAAAAAGTTGTCTGATAAATTAGGATCACAGTGGAACAAGGAGGAACTAGAGCGGTTTTATGTAGCATACAGGAAGTACGGGAAAGACTGGAAGAAGGTGGCTAAAGTTGTACGTAATAGATCTGTAGAAATGGTGGAGGCTCTTTACAATATGAATCGGGCATACCTATCTCTGCCAGAGGGGACAGCTTCTGTTGTTGGCCTAATTGCAATGATGACGGATCACTATAATGTGCTGGAAGAGAGTGATAGTGAAAGAGAGATCAATGATGCACCAGGATCTCGAAAACATGTGAAACGAAAGCGGGGGAAAATTCAGCTTAGTGTCTCAAAAGATGCAGACCAGTCTCAATCAATTGCTTCCAATGATGGTTGCCTCTCTCTATTGAAGAGAGGACGCTTTGATGGTAGCCAGCCTCGTGCAGTTGGGAAAAGGACTCCTCGTGTCCCAGTTAATTACTCCTATAAGAAAGATTATAGGGAAAATTATGTGTCACCTAATAAAAGAAGCCTGAAGTCAGATTTTGATGCTAATGATGATGAAGTTGCTCATGTGGCAGCTTTTGCATTAACTGAGGCTGCACAAAGAGGTAGTGTTCCCCAAATATCTCAAATGCCGTATAAAAGATCAGATCAGAAGTCCACTCCTGTTCAGAGCTGGGAAAGAATGCACCAAGAGTCCGAGACAGTTCCTGTCAAGTTTTATAATTCTTCTATGGAAGAAGAGTGCTTGGAAGTTAGTATAGAAAGCAGGGGAGCTGAAAATGGAGAATATACTAGAGATACTAGTTCCTTGATGAACATGGAAGGCATAGGCACTGTTGAAGTTCATCAGAAAGGGAAAAAAAACTATGCAAAGAAGAAAAGAGTGGAAATTGTTGGAAACTATCTTGATGATGGTGGAGAAGCATGTAATGGCACTGAAGAAGGACTTAATTTTAGTTTGAAGGAAAAAGTTGTTATTGAGGGTACTAATGCCAAACCAAAGCATAATCTTTTGTTTGGAGATGAAAGCTCTGCCCTGGATGCTTTGCAAACTTTGGCTAATCTGTCTCTAATGATACCAGCATCTACTTTGGAATCTGAATCATCTGCCCAGTTGAAGGAAGGAAGAATGATTGTTGAGAAAGCCAAAAAGTCTACTTTTCCTGAAGGGACCCAAAACATAGACAAAATTCTCCCAGATTCAAGACAAAAGGTTGTTCATGCAGGCCCTGGAATTGAAGTTTCAACCTCCCCAAAATCTAAACTTGAAAGGGAATCAGTAAATGATACTAATGCTCTCTTTGAATCAAAAGAGCATATTCTCTCTGCTTATAAAACGTGGAAAAGAAAACGCAAGTCTATGGTTTCAAAGGATGTAGATGAAGAGAGCAAAGCTGATCAGATTTCCACTCTTGAAAAACAATTAAAGTTGGTCATGTCATCAGAAAGTTCCCCGTGTAGTGACCAGAAAGAATTGGGCGTATCAACTGCAGAAATTCCACTTGCGAGTGAAGTTATTTTATCAACTAAAATAAGAAGTAGACATAAGATGATTTTACAGAGAACGTTAATGCCTAAAGAGAAATCTTCTGAGAACATATTGAAAAGTCAACCTAATAAAGATTTGACCCCCCTCCAAGATAGGGCATTAGTTTTAAAGGAAAAGCTTTCTGGTTGCTTGTCATCTTATATGGTTCGCAGATGGTGTATGTTTGAATGGTTTTATAGCGCAATTGATTATCCATGGTTTTCCAAAAGGGAGTTCACGGAGTACTTAAATCTTGTAGGTCTAGGGAATATCCCAAGGCTATGTCATGTTGAGTGGAGTGTCATTAAAAGTTCCCTTGGCAAACCACGCAGATTTTCTGAACACTTTCTTCATGAAGAAAGACAAAATCTGGAACGGTATCGGGAATCTGTTAGGAAACATTATGCTGAACTGCTGACTGGTATCAGAGATGGACTTCCAACGGATTTAGCTAAACCTTTATATGTTGGACAACGAGTAATTGCTCTTCACTCAAAGACAAGAGAGATTCATGATGGAATTGTGCTTACAGTTGACCATGACAAGTACAGGGTTCAGTTTGACCGTCCTGAATTGGGTGTTGAATTTGTCATGGACATTGATTGCATGCCTTTTAATCCATTGGATAATATGCCAGAAGCTCTGAGGAGGCATATTGACGCTGGTAAAGTCCCTCGTGTGAGTAAAGAACCACAACTGAAAGGAAATTCAAGTTTTGGGGGGTGCATGACGTGGGCTTCAAGTGGACCTGGGGAGAAGACACACACCGCTTCAATTAATTTGGCTAAGCAGGAAAAGGTTTCTAATGCTTTGCTTCATTTGAGGCAACGTAATAATAACACGGGAAACTCATTGCCACCTTGGATGAAACCTCAAGCAAGTTTCAACGTTCATGATGGCCTTGCCAGTACGTTGGATAGTTCTTTACCTCAAGAGTTAGGGTCAACTGTCATTGAAATTATTAGAGGATCAAGGCTTAAAGCACATGCCATGGTGGATGCGGCAATTCAGGCATTGTCTTTGACGAAGGAAGGTGGAGATGCTTTCATGAGGATTGGGCAGTTATTGGATTGTATCGATTATCAGAAGTTGGGCACCAACTCTAGGTTACCTGGGATCAGGTCCCAAGAGCAAGTGAATTGCAGTTTTGATTACCATAGTCGGTCAATTTGCTGTTCATCTGAGCCTTTGCTCAATGATGCATCTGGTCCAAAATTGCATCACGATTCTGACAAAGTTGATACCAAAATTCCTTCAGACCTCATCATTTCTTGTGTTGCTACATTGATCATGATACAGACTTGTACTGAACGACAATATCCTCCAGCTGATGTGGCTCAGACATTAGATTCTGCTGTTACCAGCCTGCATCCATGCAATCCACGAAACCTTCCTATTTACAGAGAAATTGAAATGTGCATGGGAAGAATTAAGACCCAGATTTTAGCTCTCATCCCTACCTGA 3084 0.406 MAPTRNPRSMNKRFSSLNEVSPEKDGVNSNKNKQRKKKLSDKLGSQWNKEELERFYVAYRKYGKDWKKVAKVVRNRSVEMVEALYNMNRAYLSLPEGTASVVGLIAMMTDHYNVLEESDSEREINDAPGSRKHVKRKRGKIQLSVSKDADQSQSIASNDGCLSLLKRGRFDGSQPRAVGKRTPRVPVNYSYKKDYRENYVSPNKRSLKSDFDANDDEVAHVAAFALTEAAQRGSVPQISQMPYKRSDQKSTPVQSWERMHQESETVPVKFYNSSMEEECLEVSIESRGAENGEYTRDTSSLMNMEGIGTVEVHQKGKKNYAKKKRVEIVGNYLDDGGEACNGTEEGLNFSLKEKVVIEGTNAKPKHNLLFGDESSALDALQTLANLSLMIPASTLESESSAQLKEGRMIVEKAKKSTFPEGTQNIDKILPDSRQKVVHAGPGIEVSTSPKSKLERESVNDTNALFESKEHILSAYKTWKRKRKSMVSKDVDEESKADQISTLEKQLKLVMSSESSPCSDQKELGVSTAEIPLASEVILSTKIRSRHKMILQRTLMPKEKSSENILKSQPNKDLTPLQDRALVLKEKLSGCLSSYMVRRWCMFEWFYSAIDYPWFSKREFTEYLNLVGLGNIPRLCHVEWSVIKSSLGKPRRFSEHFLHEERQNLERYRESVRKHYAELLTGIRDGLPTDLAKPLYVGQRVIALHSKTREIHDGIVLTVDHDKYRVQFDRPELGVEFVMDIDCMPFNPLDNMPEALRRHIDAGKVPRVSKEPQLKGNSSFGGCMTWASSGPGEKTHTASINLAKQEKVSNALLHLRQRNNNTGNSLPPWMKPQASFNVHDGLASTLDSSLPQELGSTVIEIIRGSRLKAHAMVDAAIQALSLTKEGGDAFMRIGQLLDCIDYQKLGTNSRLPGIRSQEQVNCSFDYHSRSICCSSEPLLNDASGPKLHHDSDKVDTKIPSDLIISCVATLIMIQTCTERQYPPADVAQTLDSAVTSLHPCNPRNLPIYREIEMCMGRIKTQILALIPT 1027
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4766g00088 1027 MobiDBLite consensus disorder prediction 118 154 - -
Gabi4766g00088 1027 MobiDBLite consensus disorder prediction 26 43 - -
Gabi4766g00088 1027 Coils Coil 657 677 - -
Gabi4766g00088 1027 MobiDBLite consensus disorder prediction 241 260 - -
Gabi4766g00088 1027 Pfam DIRP 604 704 IPR033471 -
Gabi4766g00088 1027 SMART sant 43 91 IPR001005 -
Gabi4766g00088 1027 SUPERFAMILY Homeodomain-like 42 90 IPR009057 -
Gabi4766g00088 1027 Gene3D - 4 99 - -
Gabi4766g00088 1027 ProSiteProfiles SANT domain profile. 42 79 IPR017884 -
Gabi4766g00088 1027 MobiDBLite consensus disorder prediction 1 43 - -
Gabi4766g00088 1027 CDD SANT 47 88 IPR001005 -
Gabi4766g00088 1027 Pfam Myb-like DNA-binding domain 45 82 IPR001005 -
Gabi4766g00088 1027 MobiDBLite consensus disorder prediction 1 25 - -
Gabi4766g00088 1027 FunFam Protein ALWAYS EARLY 3 isoform A 3 99 - -
Gabi4766g00088 1027 PANTHER LIN-9 1 786 IPR010561 GO:0006351|GO:0017053
Gabi4766g00088 1027 SMART DIRP_2 605 706 IPR033471 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4766g00088 Gabi-Chr4766 843855 866146 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gabi4766g00088 DIRP 1.8e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4766g00088 - - ccaj:109812074 1156.35