Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4766g00086 ATGTCAGATTCACAGTCCAATCCAGAGGTTTTCAGTGTTCGGATTGTCTCCATCGACTATTACATGGCACCGCCAATCCCAGGCGCGGATATCTGTTACAGCAGCTTCCATGGTGGAAAAGTGAACGAGGTTCCTGTGATAAGAGTCTATGGTTCTACCCCTGCTGGCCAGAAGACTTGCTTGCACGTACATCGAGCTTTACCTTATATGTACGTTCCGTGTTCAGATATACCACTTCAACCAGACCAAGAAGGTGATGCATACACCTATAGGGTAGCTGCTTCTCTTGAGAAAGCCTTGAAGCTTAAAGGCGGTGCTGGTTCAATGAGACAACATGTACATGGCTGCAGCTTTGTACGAGCAAAGAAATTTTATGGCTATCATTCTTCTGAGGAGTTATTTGTAAAGATATATCTATATTATCCACAAGATGTCTCCCGTGCAACTAATCTTCTCTTGGCTGGTGCTGTTCTTGATAAAAGTTTGCAGCCACATGAATCACATATTCCCTTTATTCTTCAATTTCTGGTTGATTACAACTTGTATGGCATGGGTCATTTACACCTATCAAAGATGAAGTTCCGCCATCCCATACCGGACTCTTCTCGTGAGAAATTAAATATTGATAGCCAGCACAGAAAGACAGGTTCAGGTGCTAATGCATGTTTAGAGTCAAAGTTGTGGATATCTTCCATGATCGCATCTGATTGGATGTGGTCACCCCCTGGCGAATTCGGTGCTTCGCAAAATGATAAGGCTTATTGTCCTAAACGTCAAAGCATCTGTGAGCTTGAAGGAGACACTTCTGTAGATGAGATTCTTAATCAGCAGTTTAAAATGTATTCATCTCTCTCACAAACATGCTTAGATGTCAACATGGTTCAGTCACTTGTACCGATATGGGAGGAACAGCGGAAACGAACTGGGATTCATGAGGCTACTATGCCTTCTAATTCTGGACAACCGCTTCCGGAAGATGTTATGAAACTTCTCTCTGTTTGTCTTGACTTCAAGAAAAAACTTATTGAATTGTGCAGTGAAGCTGAAACCTCTCTATTTTTTACTCCTTCTGAGAAGGAATTGAGGGAAACAGACATAATAGGCTCGGCATCACCCCCAGCTTCATTATGTAAAAATGCCGAATTGCATGAGGAAGGGACTGACACAAGTCTAAAATCGTTGACTATTGATGAAATGCAAACATCTGAAATGATTGGAACAATGGACGTAAAGGCTGCAGATAAGGAAGCACAAAATCTTCTTAAGTGGCTTGCAACTTCTCAAGCTGCAGAGGATATAGACTCTGATGATGAACTTGTTTGTGAAACAATCTTGAGTCCCTTGTTACCTGCAGCAACAATTGATAAGGTGCTGGAGAAAGCTAATATGGCTTATGAGAGTGAGTCCCAGAAGGAGTGTCAGGATATTCTAGATTCAATTGATGATATGCTTGAGTTGGAGTTACCAAAGGAAAAGCCTTCTTGTTCCTTTGATCACAATTGTCCTATTGAGGCTTCATCAAACAGTATGATACCCCAATTTGATGGTTCTAATGATGATGAATTCTCAAGTCCGTGTACTAGTTTGGCTGGAACCTCTTCTGCAGCAGAGATAGATAGTGAATTCAAAATGGCTTCTGAGTACCATGTACTGCACAGTACTGACACAAGTACAGTTGGTAAAGATAAAAGGACTAAAAAATGGGGGTCTTTGCCTTTGTCCATGACAGATAAGTTTAATAATGATGGAGAACATGTTACTCTACATGCGGCTCATCCTTTAGAAAATGAAACTGGAGATTCAGCTCACTTAGATTACTTCACCAGAAATGAGGTTAGAAATAGTGCTTGTATTATAAGAAATGTGGGCAAAGGTGCTTCAGATTCAAAAGAAGTACATAGATTGGTTAACTGCTCTTTGCGGGACCTGATGAGGCGAAAGCGATCCTATCGAGTTGATCAAGCTGAATGCGAGTCTGGGACAACTAAAAAGCTTCTTTTAGACAGGCATGGAGGACTAAATACATGCCTTTCGCAAAAACAAGTGGATTTGAAAACAATTCAAACCAATGAAGAAGAAACAGAACTCCAGAAGAATTGTGATCTTAAAGTGGGCAATCATGATAATTTAGTGTGTGGCAAACTGCCCCTTCTAGCTGGCAGTGATAGTTTTTTACAGGCTTGTATGCCAAAAGATGAATGTTTTGGTCTACATGAAATGGAGGGTCTGGAAGCAAGTACAGTGTTGAGGAACTCCACAAATGGAGTTTCTTCTTTAATGCATGGAGGACCAGGGCTCCATAAGCCTGAAAATTTAGATTTTACTGATTCCATATACCACTCTGTAGCTAGCAGTGGTAAAAACCTTAAGGTTGGTACAGCTGATGCAAAACCTATAGTTCCTGATGTCTATACTCCAAATCCCTTTTTAGGTGCTCAGTTGAGAACTGATGCTGATCATAAAGGCAGAGCTTCCGATAGGTGTCAGCAAACTGATTCTGCTGCTTCAAGTAGTGCACAGAGCTCATCCATTGATGATAAAGGGTCTGACAAACATAATTGTTTGGATCAAAATTCTTGTGGAAGCATATCTTTCGAGCAACATGATCCGATGAAGCTTTATGAGAATGCTGTGGGCGAAAGTGCTGCAAGTGACAAGCTAGTATTGCTAAGTGAAAAAGTTGATATTCAAAAACTTGGTGAAAATTTGTTGCACAGTATTGGCTCAGAACCCATTGTTGATGACCTGAAGGGTAATCACATGAAATTAACTGAAACAACCACAGGCAAGAAAACCGCATTGGCTAATAAGAGTCTTGAGAGTAATTCTCCCATGCCAACAGTCTCTAATACCCATTTAGGTTTGGATGAGGACAGCTGTGATGAAATGTCAGGGAATGCTCTGGATGTTTTTCGTCCCATTTCTGCCAGGGATTCCCAGAGAGAGATGGAAACTTGGAACAAGCATATTACAATTAAAACCCTTAGATCTCATGGGACAAAGGGTGTTGCCACTCTCTATCAAAATGATGGCTCTCACCTATACATATTAACACCTAATATTTTGCCACCTTCTGTGGGTACTGTTCATAGATGGCTATTTTGTGATGAAAGAGCTGGGCATACTCCTGATCAAATGCCTCAAGAAACTGATGCAGAGGACAAGGATGTACCTAAATGCCCTTCTGGACCTCCTCTTAGGCCTAAGTTGTATCAGGATGCTGGTACAGAAGAGAAGCCTCCATGCACTAGCGAAGGACAAAAAGAAAGAGTAAAAGCATGCCTAGATGGTTCACAAGATATTTCTCAGATATCAGGGCCTGATGAGAAATCAAATTTTACCCCTCTAAGTCAAATTGGATTTCGAGACCCTGCTAGTGTTGGCCGTGGACAGCAATTGACATTACTTAGTATAGAGGTTCTTGCAGAATCTAGAGGAGACCTTTTACCTCATCCTCAGTTTGATGGGATCAACATTGTAGCTCTTGGTTTTCAGAATGATAGTGATTCTATTGTTGAAGTTCTTGTTCTTTTGCATAGTAAATTTATACCTTGTCAGAGAAGTTTTGATGGTCTATCAGGATGCAAAGTATTGGTCTTCACTGATGAAAAGCACTTGTTAAAAGAATTTATAAAGATTGTGTCTTCATCTGACCCAGATATTTTGATGGGTTGGGATATTCAAGGGAGTTCTCTTGGTTTTCTAGCTGAAAGGGCATCACATCTTGGTTTAGGTTTACTTAATAGTTTGTCTCGCACTCCATCTGAGTCTTGGATTGCTTCTGAAGATGCCAAAACTTCTGAAAAAGGTATCTTGGAACTGGACATCCCTGATACCCCTAGTCTAGATTGTTGCATGAAAGAAAGTTCAATAATTGAGGATGAATGGGGACGAACACATGCCAGTGGAGTTCATGTAGGTGGAAGAATTGTCCTTAACGTATGGCGATTGATCCGTGGAGAAGTTAAGCTAAATTTATATTCTGTTGAAGCTGTAGCTGAAGCTGTGTTGAGGCAGAAAATTCCTTTAGTTCACCACAAGGTGCTGACAAAATGGTTTTCCAGTGGTCCTGGACGAGCAAGATATCAGTGTATCAAATATGTTATAGAGAGAGCAAAGCTAAACCTTGAGATACTAAACCAACTTGATATGGTGAATCGAACATCGGAACTTGCTCGTGTCTTTGGCATAGACTTTTTTTCTGTTCTGTCTCGAGGCTCACAATATCGTGTTGAATCCATGTTTTTGAGGTTGGCCCATACACAAAACTATCTTGCTATCTCACCTGGAAATCAACAGGTTGCTTCTCAACCTGCCATGGAGTGCCTGCCCTTAGTAATGGAACCGGAGTCAGGATTTTATTCAGATCCTGTTGTTGTACTTGACTTCCAGTCTTTATATCCATCCATGATAATTGCATACAACCTTTGTTTTTGTACATGTCTTGGAAAAGTTGTCGCAGCGAAGGCTAACACGCTTGGTGTTAGTTCGTTTTCACCAGAGCAACGTGTTCTGCAGGATTTAAAAGATCAAATCTTGCTCACCCCAAATGGTGTTATGTTTGTACCTTCCAAGGTTCGAAGAGGTGTAATGCCCCGCTTATTGGAAGAAATCTTATCAACTAGAATAATGGTAAAACAATCAATGAAAAAGTTGGCTCCTTCAGAGCAAGTTCTTCAGCGGATACTTAATGCAAGGCAGCTTGCTTTGAAGCTCATATCAAATGTAACATATGGTTACACTGCTGCTGGATTTAGTGGCCGCATGCCTTGTGCAGAACTTGCGGACAGTATTGTTCAATGTGGCCGTAGTACACTGGAAAAGGCTATATCATTTGTAAATCTACATGAAAAGTGGAATGCTAAAGTTATTTATGGAGATACTGATAGTATGTTTGTCCTCCTGAAAGGACGCACCATCAAAGAGTCCTTCCAAATTGGGAGTGAGATTGTTTCTGCTATCACTGCTATGAATCCTAGTCCTGTCACCCTGAAGATGGAGAAAGTTTATCACCCCTGTTTCCTCCTAACTAAGAAGCGATATGTTGGCTACAGTTATGAAAGGCCTGACCAAAGTGAACCAGTTTTTGATGCTAAAGGTATTGAGACAGTACGCAGGGACACATGTGGTGCAGTTGCAAAGATAATGGAGCAGTCTTTGAGACTCTTTTTTGAGCATCAGGATTTATTGGAGGTGAAGACTTATTTGCAACGTCAGTGGAAGAGGATTCTTTCGGGCAGATTCTCCCTTAAAGATTTTATTTTTGCAAAGGAGGTTCGCTTGGGTACCTACAGCACAAGGATCTCATCACTTCCTCCTGCTGCAATTGTGGCCACTAAGGCAATGAGGGTAGATCCTAGGGCAGAACCACGTTATGCTGAGAGAATACCTTATGTTGTAATCCATGGAGAACCTGGAGCCCGCCTAGTTGATATGGTTGTGGATCCTTTGGAAGTTTTGGCTATTGATTCCCCATTTAGAACAAATGATTTATATTATATTAATAAACAAATAATACCGGCTTTACAGAGGGTATATGGGCTTGTTGGTGCTGATCTGAACCAGTGGTTTTCAGAGATGCCCCGTCCCATTAGGGAAGCTTCTGCTAAGCGTACTTTCACTCCAAATATCCATCGAACCAGAATTGATTATTACTATCTCTCAAAACATTGTGTACTGTGTGGTGGGTTGGTCCAGGCATCGGCCCATTTATGTAATCAGTGTTCTGAAAATGAAGTAGCTGCTGCAACAGCAGTAATTAGTAAGACTTCGAAGTTGGAGCAAGAGATGCAACATCTTGTTGCTATATGTCACCATTGTGGAGGCGGGGATAGGCTTCTTGAGGGTGGCGTAAAGTGCACGTCCATTTCATGCTCGGTGTTCTTTGAGAGGCGGAAAGTTCAGAAAGAACTACTAGCTGCCACCCATGTTGCTGCAGGTAAAGGCTTCTATCCAAGATGCATGATGGAATGGTTCTGA 5979 0.4138 MSDSQSNPEVFSVRIVSIDYYMAPPIPGADICYSSFHGGKVNEVPVIRVYGSTPAGQKTCLHVHRALPYMYVPCSDIPLQPDQEGDAYTYRVAASLEKALKLKGGAGSMRQHVHGCSFVRAKKFYGYHSSEELFVKIYLYYPQDVSRATNLLLAGAVLDKSLQPHESHIPFILQFLVDYNLYGMGHLHLSKMKFRHPIPDSSREKLNIDSQHRKTGSGANACLESKLWISSMIASDWMWSPPGEFGASQNDKAYCPKRQSICELEGDTSVDEILNQQFKMYSSLSQTCLDVNMVQSLVPIWEEQRKRTGIHEATMPSNSGQPLPEDVMKLLSVCLDFKKKLIELCSEAETSLFFTPSEKELRETDIIGSASPPASLCKNAELHEEGTDTSLKSLTIDEMQTSEMIGTMDVKAADKEAQNLLKWLATSQAAEDIDSDDELVCETILSPLLPAATIDKVLEKANMAYESESQKECQDILDSIDDMLELELPKEKPSCSFDHNCPIEASSNSMIPQFDGSNDDEFSSPCTSLAGTSSAAEIDSEFKMASEYHVLHSTDTSTVGKDKRTKKWGSLPLSMTDKFNNDGEHVTLHAAHPLENETGDSAHLDYFTRNEVRNSACIIRNVGKGASDSKEVHRLVNCSLRDLMRRKRSYRVDQAECESGTTKKLLLDRHGGLNTCLSQKQVDLKTIQTNEEETELQKNCDLKVGNHDNLVCGKLPLLAGSDSFLQACMPKDECFGLHEMEGLEASTVLRNSTNGVSSLMHGGPGLHKPENLDFTDSIYHSVASSGKNLKVGTADAKPIVPDVYTPNPFLGAQLRTDADHKGRASDRCQQTDSAASSSAQSSSIDDKGSDKHNCLDQNSCGSISFEQHDPMKLYENAVGESAASDKLVLLSEKVDIQKLGENLLHSIGSEPIVDDLKGNHMKLTETTTGKKTALANKSLESNSPMPTVSNTHLGLDEDSCDEMSGNALDVFRPISARDSQREMETWNKHITIKTLRSHGTKGVATLYQNDGSHLYILTPNILPPSVGTVHRWLFCDERAGHTPDQMPQETDAEDKDVPKCPSGPPLRPKLYQDAGTEEKPPCTSEGQKERVKACLDGSQDISQISGPDEKSNFTPLSQIGFRDPASVGRGQQLTLLSIEVLAESRGDLLPHPQFDGINIVALGFQNDSDSIVEVLVLLHSKFIPCQRSFDGLSGCKVLVFTDEKHLLKEFIKIVSSSDPDILMGWDIQGSSLGFLAERASHLGLGLLNSLSRTPSESWIASEDAKTSEKGILELDIPDTPSLDCCMKESSIIEDEWGRTHASGVHVGGRIVLNVWRLIRGEVKLNLYSVEAVAEAVLRQKIPLVHHKVLTKWFSSGPGRARYQCIKYVIERAKLNLEILNQLDMVNRTSELARVFGIDFFSVLSRGSQYRVESMFLRLAHTQNYLAISPGNQQVASQPAMECLPLVMEPESGFYSDPVVVLDFQSLYPSMIIAYNLCFCTCLGKVVAAKANTLGVSSFSPEQRVLQDLKDQILLTPNGVMFVPSKVRRGVMPRLLEEILSTRIMVKQSMKKLAPSEQVLQRILNARQLALKLISNVTYGYTAAGFSGRMPCAELADSIVQCGRSTLEKAISFVNLHEKWNAKVIYGDTDSMFVLLKGRTIKESFQIGSEIVSAITAMNPSPVTLKMEKVYHPCFLLTKKRYVGYSYERPDQSEPVFDAKGIETVRRDTCGAVAKIMEQSLRLFFEHQDLLEVKTYLQRQWKRILSGRFSLKDFIFAKEVRLGTYSTRISSLPPAAIVATKAMRVDPRAEPRYAERIPYVVIHGEPGARLVDMVVDPLEVLAIDSPFRTNDLYYINKQIIPALQRVYGLVGADLNQWFSEMPRPIREASAKRTFTPNIHRTRIDYYYLSKHCVLCGGLVQASAHLCNQCSENEVAAATAVISKTSKLEQEMQHLVAICHHCGGGDRLLEGGVKCTSISCSVFFERRKVQKELLAATHVAAGKGFYPRCMMEWF 1992
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4766g00086 1992 CDD DNA_polB_zeta_exo 1130 1380 - -
Gabi4766g00086 1992 Gene3D - 1164 1441 IPR036397 GO:0003676
Gabi4766g00086 1992 Gene3D DNA Polymerase, chain B, domain 1 30 196 - -
Gabi4766g00086 1992 Gene3D - 1700 1865 IPR042087 -
Gabi4766g00086 1992 FunFam DNA polymerase 1700 1868 - -
Gabi4766g00086 1992 SUPERFAMILY Ribonuclease H-like 36 1405 IPR012337 -
Gabi4766g00086 1992 FunFam DNA polymerase 30 196 - -
Gabi4766g00086 1992 CDD POLBc_zeta 1406 1854 - -
Gabi4766g00086 1992 ProSitePatterns DNA polymerase family B signature. 1625 1633 IPR017964 GO:0000166|GO:0003676
Gabi4766g00086 1992 MobiDBLite consensus disorder prediction 1040 1086 - -
Gabi4766g00086 1992 FunFam DNA polymerase zeta 1525 1584 - -
Gabi4766g00086 1992 FunFam DNA polymerase 1140 1441 - -
Gabi4766g00086 1992 Pfam DNA polymerase family B, exonuclease domain 1191 1258 IPR006133 -
Gabi4766g00086 1992 Pfam DNA polymerase family B, exonuclease domain 55 196 IPR006133 -
Gabi4766g00086 1992 Pfam DNA polymerase family B 1399 1845 IPR006134 GO:0000166|GO:0003677
Gabi4766g00086 1992 PRINTS DNA-directed DNA-polymerase family B signature 1623 1631 IPR006172 GO:0000166|GO:0003676|GO:0003887
Gabi4766g00086 1992 PRINTS DNA-directed DNA-polymerase family B signature 1458 1471 IPR006172 GO:0000166|GO:0003676|GO:0003887
Gabi4766g00086 1992 PRINTS DNA-directed DNA-polymerase family B signature 1567 1579 IPR006172 GO:0000166|GO:0003676|GO:0003887
Gabi4766g00086 1992 SUPERFAMILY DNA/RNA polymerases 1445 1859 IPR043502 -
Gabi4766g00086 1992 Gene3D Helix hairpin bin 1524 1584 - -
Gabi4766g00086 1992 PANTHER DNA POLYMERASE ZETA CATALYTIC SUBUNIT 5 1985 IPR030559 GO:0006281|GO:0016035|GO:0019985
Gabi4766g00086 1992 Gene3D Palm domain of DNA polymerase 1444 1689 IPR023211 -
Gabi4766g00086 1992 SMART polmehr3 1131 1637 IPR006172 GO:0000166|GO:0003676|GO:0003887
Gabi4766g00086 1992 MobiDBLite consensus disorder prediction 828 844 - -
Gabi4766g00086 1992 MobiDBLite consensus disorder prediction 1040 1060 - -
Gabi4766g00086 1992 Pfam C4-type zinc-finger of DNA polymerase delta 1891 1964 IPR025687 -
Gabi4766g00086 1992 MobiDBLite consensus disorder prediction 818 853 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4766g00086 Gabi-Chr4766 772927 791425 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4766g00086 1169 1974 Core DNA Replication Machinery Family AT5G63960 29.013 2.35e-84 300
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4766g00086 K02350 - gmx:100777934 3220.25