LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi4766g00082	ATGCAAGACATTGTCGGATCAGTTCGCCGATCACTGGTATTCCGTGCATCGCCGGAGAACGACCAACCCTCGCTCGGAGTTGGAGGAACCCTAGTTGATAAAATCGGTTATTGCATCCGCAATTCTAGAGTCTTCTCCAAACCCTCGCTGCCGTCTCCGCCCATCTCCAAGGACGCTGCGCCTCTGATCCGATGGCGCAAGGGCGAGTTGATCGGTTACGGTGCCTTTGGCCAAGTATACGTTGGAATGAATCTTGATTCCGGAGAGCTTCTAGCAGTTAAACAGGTTTTGATTGCGTCCAGTAGTGCGTCGAAGGAGAAGGCACAGGCTCACGTAAAAGAGCTTGAGGATGAAGTTAAATTACTTAAAGATCTTTCACATCCCAACATTGTTAGATATTTGGGTACTGTCAGAGAAGAAGACACCTTAAATATTTTCCTAGAGTTTGTTTCTGGTGGATCCATATCATCACTACTGGGGAAGTTTGGAGCTTTCCCTGAGGCTGTCATTAGAACTTACACGAAGCAATTACTAATTGGACTGGAGTACTTGCACAAAAATGGAATAATGCACAGAGACATTAAGGGGGCCAATATTCTTGTAGATAATTTGGGGTGCATAAAACTTGCAGATTTTGGGGCATCCAAACAGGTCGTTGAGCTGGCTACCATTTCCGGTGCCAAGTCTATGAAGGGTACTCCATATTGGATGGCTCCTGAAGTTATTCTCCAGACTGGGCATAGCTTCTCTGCTGACATATGGAGCGTGGGTTGTACTGTAATTGAGATGGCCACGGGAAAGCCTCCCTGGAGCCAGCAATACCAACAAGAGGTTGCTGCTCTCTTCCATATAGGGACAACCAAGTCTCATCCGCCAATCCCTGATCATCTCTCCATTGCAGCAAAAGATTTTCTGCTAAAATGTTTGCAGAAGGAACCAATTTTGAGGCCATCAGCGTCGGAATTGCTGCAGCATCCCTTTGTTACTGGTGAACCTATGGATTCTCTTCCTCTGTCATCTACTGCCGTGGAAAATTCTGGAGCTTCTTCACCATCATGCGCCCCAAATGTTGAATCCTTCCTTTGCCGCTCAACTGTAAATCCTCAGGACTCGGGAAATAAACAGTCGTGGGGAATGAGCAATGATGATGACATGTGTGAGATTGATGACAAAGAAGAGTTCTCCGAGAGTGATGTCAAATACAAATCATTGATGTCAGATAATATTGAGAGTTTCAACCCGATGTCTGACCCCTCTGATGATTGGGGCTGTAAATTTGATGCAAGTCCAGAACTGGAAAATAGAGGAGTTAGTTTTGACACTGATGAAACTTACATGCCACCTGGTCAGTCGGGGGCTAATAAGAGGCAGAGAGAATTTTCCTTTCCATGTGCGCCATCTCTGTCAGAAGAAGATGATGAGCTCACAGAGTCAAAAATTAAAGCGTTTTTGGATGAGAAGGCTCTTGAACTGAAAAAACTGCAGACACCTTTATATGAAGAGTTTTACAACAGCTTAAATACATCTTGTTCTCCCAATGTCATTGAAAGCACAAGTGATGACACTGCTGCTAGAAAATACTTGAAATTACCTCCTAAAAGCAGGTCACCAAGTCGGGTACCAATTAGCACTCCGTCTAAAGCAGTTGACAATGCTGGAAGTCCTGGAAGTAATGGCAGGTCCTCATCAACTGTTGGGAATGTAAATAACCATGGTTCACAGGATATTCCAGCATCTCCCCTTAATGAATGGAAAGGACTGACAGTTGACTCCCAACAGGAGCCCCGTAGCCCAAGTTTAAACTTTTCTGAAAGACAGAGGAAGTGGAAAGAAGAGCTCGACCAGGAGCTTGAGAGAAAACGAGAAATGATGCGCCAAGCTGGTATGGGAGGAAAGACATCTTCACCAAAGGATCAAGCTTTTCGGCAGAGAGAGCGGACAAGATTTGCTTCTCCCAGCTAA	1962	0.4531	MQDIVGSVRRSLVFRASPENDQPSLGVGGTLVDKIGYCIRNSRVFSKPSLPSPPISKDAAPLIRWRKGELIGYGAFGQVYVGMNLDSGELLAVKQVLIASSSASKEKAQAHVKELEDEVKLLKDLSHPNIVRYLGTVREEDTLNIFLEFVSGGSISSLLGKFGAFPEAVIRTYTKQLLIGLEYLHKNGIMHRDIKGANILVDNLGCIKLADFGASKQVVELATISGAKSMKGTPYWMAPEVILQTGHSFSADIWSVGCTVIEMATGKPPWSQQYQQEVAALFHIGTTKSHPPIPDHLSIAAKDFLLKCLQKEPILRPSASELLQHPFVTGEPMDSLPLSSTAVENSGASSPSCAPNVESFLCRSTVNPQDSGNKQSWGMSNDDDMCEIDDKEEFSESDVKYKSLMSDNIESFNPMSDPSDDWGCKFDASPELENRGVSFDTDETYMPPGQSGANKRQREFSFPCAPSLSEEDDELTESKIKAFLDEKALELKKLQTPLYEEFYNSLNTSCSPNVIESTSDDTAARKYLKLPPKSRSPSRVPISTPSKAVDNAGSPGSNGRSSSTVGNVNNHGSQDIPASPLNEWKGLTVDSQQEPRSPSLNFSERQRKWKEELDQELERKREMMRQAGMGGKTSSPKDQAFRQRERTRFASPS	653

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi4766g00082	653	SUPERFAMILY	Protein kinase-like (PK-like)	64	329	IPR011009	-
	Gabi4766g00082	653	CDD	STKc_MAPKKK	64	328	-	-
	Gabi4766g00082	653	Gene3D	Transferase(Phosphotransferase) domain 1	64	354	-	-
	Gabi4766g00082	653	SMART	serkin_6	65	328	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi4766g00082	653	Coils	Coil	606	626	-	-
	Gabi4766g00082	653	FunFam	Mitogen-activated protein kinase kinase kinase 2	64	357	-	-
	Gabi4766g00082	653	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	189	201	IPR008271	GO:0004672\|GO:0006468
	Gabi4766g00082	653	FunFam	Serine/threonine-protein kinase STE11	61	155	-	-
	Gabi4766g00082	653	Pfam	Protein kinase domain	66	328	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi4766g00082	653	ProSitePatterns	Protein kinases ATP-binding region signature.	71	94	IPR017441	GO:0005524
	Gabi4766g00082	653	MobiDBLite	consensus disorder prediction	585	600	-	-
	Gabi4766g00082	653	ProSiteProfiles	Protein kinase domain profile.	65	328	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi4766g00082	653	MobiDBLite	consensus disorder prediction	438	458	-	-
	Gabi4766g00082	653	MobiDBLite	consensus disorder prediction	601	626	-	-
	Gabi4766g00082	653	Coils	Coil	98	125	-	-
	Gabi4766g00082	653	MobiDBLite	consensus disorder prediction	537	577	-	-
	Gabi4766g00082	653	MobiDBLite	consensus disorder prediction	530	653	-	-
	Gabi4766g00082	653	PANTHER	MAP KINASE KINASE KINASE SSK2-RELATED-RELATED	60	341	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi4766g00082	Gabi-Chr4766	732179	742303	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi4766g00082	1	652	MAP Kinase Kinase Kinase	AT1G54960	56.509	0.0	679

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	STE_STE11	Gabi4766g00082		Pkinase	1e-70	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi4766g00082	K20606		-	gmx:100807537	1123.23