Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4766g00061 ATGAAAAACAATAACGACCCACCAGTTACCCACCTGTTCTTCCTCCTCGTCCTTCTCGGAATCCCTCTCGCCGCCGCACAAGACCAACCCAGTGACTCACCCTACCCAAATCTCAACAAGTTCAACCCTTCCTTTGCAATAATCATTGTTATATTGGTTGCTGCTCTTTTCCTCATGGGCTTTTTCTCCATCTACGTTCGCCACTGCGCCGATTCGCCGCCGAACAGCCTTCACCCCCTCACCAACGGCAGGTCAAGGAGGGCGGCGCGTGGACTCGACGCGGAGGTGATCGAGACATTCCCAATCCTCGAGTATTCCGAGGTCAAGGTTCACAAGATTGGAAAAGAGGCGTTGGAATGCGCCGTTTGCTTATGCGAGTTCGAGGAAACCGAAACGCTGCGTTTGATTCCCAAGTGCGACCACGTTTTTCACCCGGAGTGCATCGACGAGTGGTTGGCTTCCCACACAACCTGCCCCGTTTGCCGAGCCAACCTCGTTCCCATCGCCGGCGAGTCCGTTCACGACGTTCCGGTGACGAACCCTGAGTCAACAGATGTCGAAGCCCAAAACGACGCCGTCGAATCCGCGCCAGAACAACAAAACGCGGACGCTGAGCGTGTCTTGTCGGAGCCAGAAGTGGTTTCCTTGGATAAAACGCTGAACAGAAACCGGACGCGGGGTTCTTCGCGAGGTTCTCGGTCGAACCGGCCACGCCGTTTGCCCCGGTCGCACTCGACCGGGCATTCGTTGGTCCAACCGGGTGAAAACACTAAACGGTTCACTTTGAGACTGCCCATGGATGTGAGGAAGCAGATAATAAACCGGCAGTTGGAACGTGCCAGCAGCTTGATTCTATTCCCCAGAGAAGGTAGCTCAAGGCAAGGTTACCGAACCGGTGGCGAGGGGAGTAGTAGGGGCAAGTTTTCGAGGCGGCTGAACCGGAGTTTTAAATCGGACCGGTGGGTTTTCACTATGACTCCCCCATTCTTAGTTAGGGAATCGTCGATTAGGTTCCCAAAAGTAGGTAATGACGCCGATGAAGGGGGTTCCTCCGTCGCCTCCGTTACGCCGCATTCGGCCGTTGACTCAAATCGCCTTCCAGTTTGA 1107 0.5501 MKNNNDPPVTHLFFLLVLLGIPLAAAQDQPSDSPYPNLNKFNPSFAIIIVILVAALFLMGFFSIYVRHCADSPPNSLHPLTNGRSRRAARGLDAEVIETFPILEYSEVKVHKIGKEALECAVCLCEFEETETLRLIPKCDHVFHPECIDEWLASHTTCPVCRANLVPIAGESVHDVPVTNPESTDVEAQNDAVESAPEQQNADAERVLSEPEVVSLDKTLNRNRTRGSSRGSRSNRPRRLPRSHSTGHSLVQPGENTKRFTLRLPMDVRKQIINRQLERASSLILFPREGSSRQGYRTGGEGSSRGKFSRRLNRSFKSDRWVFTMTPPFLVRESSIRFPKVGNDADEGGSSVASVTPHSAVDSNRLPV 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4766g00061 368 ProSiteProfiles Zinc finger RING-type profile. 120 162 IPR001841 -
Gabi4766g00061 368 MobiDBLite consensus disorder prediction 174 258 - -
Gabi4766g00061 368 Pfam Ring finger domain 119 162 IPR001841 -
Gabi4766g00061 368 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 27 259 - -
Gabi4766g00061 368 SMART ring_2 120 161 IPR001841 -
Gabi4766g00061 368 FunFam E3 ubiquitin-protein ligase ATL6 81 168 - -
Gabi4766g00061 368 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 80 167 IPR013083 -
Gabi4766g00061 368 CDD RING-H2_EL5-like 119 162 - -
Gabi4766g00061 368 MobiDBLite consensus disorder prediction 177 197 - -
Gabi4766g00061 368 SUPERFAMILY RING/U-box 119 168 - -
Gabi4766g00061 368 MobiDBLite consensus disorder prediction 342 368 - -
Gabi4766g00061 368 MobiDBLite consensus disorder prediction 229 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4766g00061 Gabi-Chr4766 593684 594929 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4766g00061 9 368 Rapid Response to Elicitors AT3G05200 42.373 1.69e-89 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4766g00061 K10664 - gmx:100781706 483.796