Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4766g00060 ATGTGTTTGCAGGGAGAGAAATATAGTGAGATAGCCATGGCACTAGAAGCAGTAGTATATCCACAACAACAAGACCCATTTGGTTATGGGATCAAAGATCTGAACAACTACAACTTATTAGCATGTGATGGAGGCAACTGGGGCTATGGCGATTTCAACCTCGAAAAAGAAGAGCATGGTTCTATCAATTTTCTCGAGAACCAAACAGAGAATTTTCCTTATGGAGATTGGAATTGCTCTCCGCCATCAATGTTGCCCCGCACGAATGAACTTCATGTCTCTAATAATCCATCTTCGGAGGCCACTGAACCCAGCACCACACACAACTTAAATAGCTCAACTTCCACGCCTTCTCGTCGTAAGAGGAGAAGAACGAAAAGCAGAAAGAATAAGGAAGAAATTGAGAACCAAAGAATGACTCACATCACTGTAGAGCGCAACCGAAGGAAGCAAATGAATGAGTATCTCTCTGTTCTTCGGTCTTTAATGCCTAAATCTTACGTCCAAAGGGGTGATCAAGCATCTATTATTGGAGGTGCTATTAACTTTGTTAAGGAGCTTGAGCAGAGGCTGCAATTTCTTGGTTCTCAGAGAGAAAAAGAGGGAAATTTTTATAAGGGTGCAGATATGCCATTTTCTGAGTTCTTCACCTTTCCACAGTACACAAGTACTGCTAGTGGTTGTGATAATTCTGAGGCAATGGGTGAACAAGTGGGTGAGGTTGAGTGTGGCATTGCTGATATAGAAGTGACAATGGTGGAGAACCATGCAAATCTCAAAATAAGATCAAAGAAACGGCCAAAGCAGCTCTTGAAGATGGTATCTAGTTTGCATGGCATGCGTCTCACAATCTTGCACCTACATGTTACTACCACCGGGGAAACTGTCCTCTATTCTCTCAGTGTTAAGGTGGAAGATGATTGCAAGCTGGGATCAGTGGCTGAGATAGCTGAAGCTGTATACCAAATGCTGGATGGGATTCAACAAGAGTCAATAATGTTGAATTAA 1008 0.4236 MCLQGEKYSEIAMALEAVVYPQQQDPFGYGIKDLNNYNLLACDGGNWGYGDFNLEKEEHGSINFLENQTENFPYGDWNCSPPSMLPRTNELHVSNNPSSEATEPSTTHNLNSSTSTPSRRKRRRTKSRKNKEEIENQRMTHITVERNRRKQMNEYLSVLRSLMPKSYVQRGDQASIIGGAINFVKELEQRLQFLGSQREKEGNFYKGADMPFSEFFTFPQYTSTASGCDNSEAMGEQVGEVECGIADIEVTMVENHANLKIRSKKRPKQLLKMVSSLHGMRLTILHLHVTTTGETVLYSLSVKVEDDCKLGSVAEIAEAVYQMLDGIQQESIMLN 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4766g00060 335 Pfam Helix-loop-helix DNA-binding domain 137 188 IPR011598 GO:0046983
Gabi4766g00060 335 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 136 187 IPR011598 GO:0046983
Gabi4766g00060 335 PANTHER MAX DIMERIZATION, MAD 76 330 - -
Gabi4766g00060 335 Gene3D - 119 201 IPR036638 GO:0046983
Gabi4766g00060 335 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 136 199 IPR036638 GO:0046983
Gabi4766g00060 335 MobiDBLite consensus disorder prediction 83 138 - -
Gabi4766g00060 335 SMART finulus 142 193 IPR011598 GO:0046983
Gabi4766g00060 335 MobiDBLite consensus disorder prediction 83 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4766g00060 Gabi-Chr4766 563783 565043 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4766g00060 13 304 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 45.860 1.92e-71 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi4766g00060 HLH 1.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4766g00060 - - gmx:100777413 457.988