Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4766g00041 ATGGACGATGCTTTTAATGATAAACACCAAAAATCAGGTCTTTTGTTTTCTTACCGTTGTTCTACTGCTCAAGATATGAGACATTTCGATTTGAAGAGAGAGAAAGAAGATGCCTCGTCTCCAAGAATTGACTCTCATCAATCACCTGAATTGGTTACCAGTTGTCCAAGCGTAAGGACACGATTTCACTGGATAAAGTTTTTGAAACAATGGAAAAAAAGATCAATTAAGCACCCAACGTCCTTCCCTTTTATTTGTTTGCCAATCATAACAAAATCTAAAAGCAAAAGCATTAGAGAAAATCCCGTTCTATGTAATGGATACAACTCCAAATCTTCTTTGGTGAATTTCAGCCTCTCTGAACTGAGAAATACAACCAAAAATTTTAGCAATGAAAATTTAATTGGAAGAGGTGGCTTTGCTGAGGTTTACAAGGGTCGGCTTCAAGATGGACAACTAATAGCGGTAAAGCGAATGAATAAAGGGACAACAGCGGAGAGGACATCAAGCTTTCTATCTGAGCTTGGCATTATTGCTCATGTTGACCATCCTAACACTGCCAAGCTTATTGGATGTGGTGTAGAAGGAGAAATGTACCTTGTCTTCCAACTATCTCCACTGGGAAGTTTAGGATCTCTTCTCCATGGTTCAAATAAAAACAAATTAGATTGGAGTAAAAGGTATAAAATTGCTATCGGGGTAGCTGATGGCCTCCTCTATCTTCATGAGATTTGTCCAAGGCGAATCGTTCATAGAGATATTAAACCAGAGAATATTCTGCTCACAGAGAATTTTGAGCCACAGATTTGTGATTTTGGGCTTGCAAAGTGGTTGCCAGAACAATGTACTCACCATAATGTATCAAAATCTGAAGGCACATTCGGGTATTTTGCTCCTGAATATTTGATGCATGGCATAGTAGATGAGAAAACTGATGTCTATTCCTTTGGGGTCCTACTTTTGGAGATTATAAGTGGGCGTCAGGCTTTGGATAATTTGCAGCAAAGTATTGTGTTATGGGCAAAGCCTTTGCTTGACGATAATAATATTAAGGACCTTGTTGATCCTTCTCTTGATGAAGATTATGACCCAGAACAGATGGATCGTGTTGTTTTGACTGCATCTCTGTGTGTTGAGCACTCTCCTCTCTTACGCCCCTGCATGAGTCAGATTGCAATACTGCTAAGAGGTGATGATTTTGTCCAGGAATCTGCAAAAGAATGCCCGAGGCGGTCTCTCCTAGAGGTGCTACAGGATTCTTGA 1263 0.3983 MDDAFNDKHQKSGLLFSYRCSTAQDMRHFDLKREKEDASSPRIDSHQSPELVTSCPSVRTRFHWIKFLKQWKKRSIKHPTSFPFICLPIITKSKSKSIRENPVLCNGYNSKSSLVNFSLSELRNTTKNFSNENLIGRGGFAEVYKGRLQDGQLIAVKRMNKGTTAERTSSFLSELGIIAHVDHPNTAKLIGCGVEGEMYLVFQLSPLGSLGSLLHGSNKNKLDWSKRYKIAIGVADGLLYLHEICPRRIVHRDIKPENILLTENFEPQICDFGLAKWLPEQCTHHNVSKSEGTFGYFAPEYLMHGIVDEKTDVYSFGVLLLEIISGRQALDNLQQSIVLWAKPLLDDNNIKDLVDPSLDEDYDPEQMDRVVLTASLCVEHSPLLRPCMSQIAILLRGDDFVQESAKECPRRSLLEVLQDS 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4766g00041 420 PANTHER OS08G0249100 PROTEIN 26 408 IPR046958 -
Gabi4766g00041 420 SUPERFAMILY Protein kinase-like (PK-like) 111 394 IPR011009 -
Gabi4766g00041 420 SMART serkin_6 129 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4766g00041 420 ProSitePatterns Serine/Threonine protein kinases active-site signature. 249 261 IPR008271 GO:0004672|GO:0006468
Gabi4766g00041 420 Gene3D Transferase(Phosphotransferase) domain 1 206 408 - -
Gabi4766g00041 420 Pfam Protein tyrosine and serine/threonine kinase 132 340 IPR001245 GO:0004672|GO:0006468
Gabi4766g00041 420 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 206 409 - -
Gabi4766g00041 420 FunFam Receptor-like cytosolic serine/threonine-protein kinase RBK1 105 204 - -
Gabi4766g00041 420 ProSiteProfiles Protein kinase domain profile. 129 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4766g00041 420 Gene3D Phosphorylase Kinase; domain 1 105 203 - -
Gabi4766g00041 420 ProSitePatterns Protein kinases ATP-binding region signature. 135 157 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4766g00041 Gabi-Chr4766 416302 427427 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4766g00041 114 402 Receptor kinase-like Gene Family AT1G53420 42.617 9.13e-70 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Gabi4766g00041 PK_Tyr_Ser-Thr 1.6e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4766g00041 - - gmx:113001177 588.956