Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4766g00017 ATGGGCGCACCAAAGAAAAGCGCCGCTAGGGTTTCAGAGGACCCCGAAGAATTGGCGCGGGTTCCCTTGCAGGCCATCCTCTTGGCTGATAGTTTTACCACCAAGTTCAGACCTATCACACTCGAACGCCCCAAGGTGCTGTTGCCACTCGTGAATGTTCCAATGATAAATTACACCTTGACCTGGCTCGAATCTGCTGGTGTCGAAGAGGTTTTTGTTTTCTGCTGTGCTCATTCCAAGCAAGTGATTAACTATTTGGAGAAATCCGAGTGGTTCTCTCAGCCAAATTTTGCTGTAACAACTATCGAGTCACAGAATTCTGTGAGCGCCGGAGATGCGCTGCGTGTAATATATGAGCATAATGTGATACATGGAGACTTTGTCCTTATCAGTGGAGATACTATCAGCAACATGTCGCTAACTCAGGCACTTCTAGAGCATAAAGAAAGGAGGAAGAAAGATAGTAATGCTGTAATGACCATGGTCATTAAACGGTCAAAACCTAATCCAAATATTCATCAGTCTCGACTTGGTACTGATGAACTTTTCATGGCCATTGATCCTGATACCAAGCAACTTTTGTATTATGAGGATAAGGCAGACCATTCAAAAGGCATTCTACATCTTGACAAGTCATTGCTTGTCGATAATCCGTCCCTCTCTCTGCACCATGACAAGGAGGATTGTTACATTGACATCTGCTCGCCAGAAGTCCTCAGCCTATTTACAGACAATTTTGACTACCAACATCTACGGCGTCATTTTGTCAAGGGATTGCTTGTTGATGATATAATGGGGTACAAAATTTTTGTTCATGAAATCCACTCAGACTATGCGGCAAGGATTGATAATTTCCGAAGCTATGACACTGTCAGCAAGGATATAATTCATAGATGGACATATCCATTGGTGCCAGATGTTATGAATTTTGGCAACACAGCTACTAAACTTGAACGACAAGGAATGTATCGTGCTTCGGAAATATCACAAGCACAATCTGCTGTCATTGGCCCGTTCACTGTTATAGGATCTGGAACCCATATTGGGAATAACACTAAAATTTTAAATTCTGTTATTGGAAAAGGATGTAAAATTGGATCAAATGTTCACATAGAGGGATGCTATATATGGGACAACATCACCATCGAAGATGGCTGTAGACTTAGACATGCAATTGTATGTGATGGCGTGACTATGAAGTCAGGAGCTGTTCTGGAACCTGGTGTTGTTTTGTCTTTCAAGGTTGTAGTCGGGCAGGAGTTTGTTGTTCCTCCTTATTCAAAAGTATCTCTATTACAGCAGCCAATTGAAGAAGATAGTGATGAGGAGCTTGAATATGCTGATAGTACTAGTGCCATCACCAGCAAAGTGGATAAGCTAGATGTAGAGATTGCTTCCCAAGTATTGGAGACACATTTTAGCCCTTCTTCGGAGCTAGGTGTGGGTGGGGTTGGTTATGTTTGGTCAAAATGTGAAGGGGGCCATGAAGAAGAGTGGAGGCATTCAGTGGCACCTATTCCTGCAGATAAAATTTTGGAGGCAATGAAAACCATGGAAGATGATCTGGAGTTAACTCATGATGGCAGTATTCTCCCACCTTCTGGAGAGCTGAAACCTAATTCTAACAATTCAGATGATGATGATAATGAAGACTCTAGAGACGACTCTTATTACTTTGAGAAGGAGGTTGAAGCAACTTTTCTCAGGGCTGTGCATGAAAGCATACAAGTAGACCATTTGATCTTAGAAGTCAACTCTTTGAAGTTGTCATACAATAAGCTAACTGCTGATTGTGCTGGAGCTGTATTTTATGCAATGATGAAGTATGCTTTAGACACCCCCCATAGTTCAGCTGATAGCTTGATTCAGAATGCCCAGGTTGTACTTAAAAAATGGAAAAAGGTTCTTACATCCTATCTGATTGACTTGGATGAGCAGATTGAAGTAATACTAAAATTTGAAGAAATGTGTTTGGAATCTGCTAAGGAGTTTGCTCCATTGTTCACAAAGATTTTGCACTACATGTATAATGAAGATATTGTAGAAGAAGATGCTATTTTGAGTTGGGAAGATGAGAAGAAAGACGCAGATGAGTCAGATAAAGTTTTTGTTATGCAGGCCCAAAAATTAATTCAATGGTTAAAAGAGGCACCCGAAGAAGACGAGGAGGAAGAATAG 2178 0.4123 MGAPKKSAARVSEDPEELARVPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLTWLESAGVEEVFVFCCAHSKQVINYLEKSEWFSQPNFAVTTIESQNSVSAGDALRVIYEHNVIHGDFVLISGDTISNMSLTQALLEHKERRKKDSNAVMTMVIKRSKPNPNIHQSRLGTDELFMAIDPDTKQLLYYEDKADHSKGILHLDKSLLVDNPSLSLHHDKEDCYIDICSPEVLSLFTDNFDYQHLRRHFVKGLLVDDIMGYKIFVHEIHSDYAARIDNFRSYDTVSKDIIHRWTYPLVPDVMNFGNTATKLERQGMYRASEISQAQSAVIGPFTVIGSGTHIGNNTKILNSVIGKGCKIGSNVHIEGCYIWDNITIEDGCRLRHAIVCDGVTMKSGAVLEPGVVLSFKVVVGQEFVVPPYSKVSLLQQPIEEDSDEELEYADSTSAITSKVDKLDVEIASQVLETHFSPSSELGVGGVGYVWSKCEGGHEEEWRHSVAPIPADKILEAMKTMEDDLELTHDGSILPPSGELKPNSNNSDDDDNEDSRDDSYYFEKEVEATFLRAVHESIQVDHLILEVNSLKLSYNKLTADCAGAVFYAMMKYALDTPHSSADSLIQNAQVVLKKWKKVLTSYLIDLDEQIEVILKFEEMCLESAKEFAPLFTKILHYMYNEDIVEEDAILSWEDEKKDADESDKVFVMQAQKLIQWLKEAPEEDEEEE 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4766g00017 725 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 11 303 IPR029044 -
Gabi4766g00017 725 CDD eIF-2B_epsilon_N 23 239 IPR035543 -
Gabi4766g00017 725 CDD W2_eIF2B_epsilon 559 715 IPR044123 GO:0005085|GO:0031369
Gabi4766g00017 725 MobiDBLite consensus disorder prediction 525 554 - -
Gabi4766g00017 725 Pfam Nucleotidyl transferase 25 166 IPR005835 GO:0009058
Gabi4766g00017 725 Pfam eIF4-gamma/eIF5/eIF2-epsilon 645 724 IPR003307 GO:0005515
Gabi4766g00017 725 PANTHER TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT EPSILON 8 725 - -
Gabi4766g00017 725 SMART 542_3 633 720 IPR003307 GO:0005515
Gabi4766g00017 725 FunFam Translation initiation factor eIF-2B subunit epsilon 12 303 - -
Gabi4766g00017 725 ProSiteProfiles W2 domain profile. 553 724 IPR003307 GO:0005515
Gabi4766g00017 725 FunFam Translation initiation factor eIF-2B epsilon subunit 549 725 - -
Gabi4766g00017 725 Pfam Bacterial transferase hexapeptide (six repeats) 340 373 IPR001451 -
Gabi4766g00017 725 Gene3D Hexapeptide repeat proteins 319 458 - -
Gabi4766g00017 725 Gene3D - 546 725 - -
Gabi4766g00017 725 SUPERFAMILY Trimeric LpxA-like enzymes 267 429 IPR011004 -
Gabi4766g00017 725 CDD LbH_eIF2B_epsilon 341 419 - -
Gabi4766g00017 725 SUPERFAMILY Nucleotide-diphospho-sugar transferases 21 369 IPR029044 -
Gabi4766g00017 725 SUPERFAMILY ARM repeat 559 717 IPR016024 -
Gabi4766g00017 725 FunFam Trimeric LpxA-like enzyme 316 449 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4766g00017 1 717 Eukaryotic Initiation Factors Gene Family AT2G34970 64.365 0.0 951
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4766g00017 K03240 - gmx:100784894 1259.97