Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4766g00014 ATGGGGTGTGTGATTAGCCGCGAGGTGTCGTCGGAAATAATCTCTGAGGTGAAGGAGGAGAGAAATTTGAGTTCCGAGTCTAATAATAGGAAGGTTGATGGAGTCTCGGAGGAGAAGGTGGTGGTAGAGGTTCAGAATGGTGGAATTGGGAACCAGAAGGAGAAGGGTGGTGGTGATGATGGGGTCCAAGTTCAGCGGGCTCGCGGAGAAAGAAGAAGATCAAAGGCGAATCCAAGGCTAAGTAATCTGCCAAAGCATTTGAGTGGGGAGCAGGTTGCAGCTGGATGGCCACCCTGGCTCACCGCAGTGTGTGGGGAAGCACTCAGTGGGTGGATTCCGCGAAAGGCTGACACATTCGAGAAAATTGATAAGATTGGGCAAGGAACTTATAGTAATGTGTACAAAGCTAAAGACACTTTGACGGGTAAAATTGTTGCTCTAAAGAAGGTTCGATTTGACAATTTGGAACCTGAGAGCGTAAAATTCATGGCTAGAGAGATTCTTATTTTGCGGAGGTTGGATCATCCCAATGTTGTAAAGTTGCAAGGTTTAGTTACATCAAGGATGTCTTGTAGTTTGTATTTGGTGTTTGATTACATGGAGCATGATTTAGCTGGACTTGCTGCGAGCCCTGGTATCAGGTTTACAGAGCCTCAGGTAAAATGTTACATGCATCAGCTGCTATCAGGACTTGAGCACTGTCATACCCGTAATGTACTTCACCGTGATATTAAAGGATCAAATCTTCTCATTGACAATGAAGGAGTACTTAAGATTGCTGACTTTGGATTGGCATCTTTGTTTGATCCAAACCATAGGCATCCCATGACTAGTCGTGTAGTAACCCTTTGGTATCGGCCTCCTGAGTTGCTTCTTGGTGCCACAGATTATGGTGTAGGCGTAGACCTTTGGAGTGCCGGATGTATCTTAGGAGAGTTATTGGCTGGGAAGCCAATTATGCCTGGTCGTACAGAGGTGGAGCAACTGCATAAGATATACAAACTATGCGGTTCACCTTCTGATGAGTATTGGAAGAAGTCAAAGTTGCCTAATGCTACCTTGTTCAAACCTCGAGAGCCATACAAGAGATGCATAAGAGAGGCATTTAAAGATTTCCCACTTTCTGCGCTACCCCTTATTGATAATCTTCTTGCACTTGATCCTGTAGAACGGAAGACTGCCTCAGATGCTTTAAGAAGTGAGTTCTTTACCACAGAACCTTATGCTTGTAATCCTTCTAGTCTTCCAAAATATCCCCCAAGCAAGGAAATGGATGCTAAACGACGCGATGATGAAGTGAGAAGACTAAGAGCACCAGGCAAAACTCAGGTTGATGGTCCAAAGAAGCATCGTATTCGTGATCGTGCTGTGAAAGCTTTTCCTGCTCCTGAAGCCAATGCCGAACTTCAAACCAATATTGATAGAAGACGTCTAATCACTCATGCAAATGCTAAGAGCAAGAGTGAAAAGTTCCCTCCACCACATCAAGATGGACAACTTGGCTTTCCTTTGGGATCTTCACATCATATTGATCCAGATACTGTTCCTACTGATGTCTCTTTCTCTTCAACCTTATATACATATACAAAGGAACCATTCCAAGCTTGGTCAGGTCCCATTGGTAATGCTGCCGACATTGGAGTTCCAAAGCGGAAGAAACACACCGCTGGTGATGCATTGAATTTATCAAGACCACATAAAGGTGCCTTCAAGGATAAGGTTAAAGGAAAGAAAATCATAGCTTAG 1746 0.4422 MGCVISREVSSEIISEVKEERNLSSESNNRKVDGVSEEKVVVEVQNGGIGNQKEKGGGDDGVQVQRARGERRRSKANPRLSNLPKHLSGEQVAAGWPPWLTAVCGEALSGWIPRKADTFEKIDKIGQGTYSNVYKAKDTLTGKIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVVKLQGLVTSRMSCSLYLVFDYMEHDLAGLAASPGIRFTEPQVKCYMHQLLSGLEHCHTRNVLHRDIKGSNLLIDNEGVLKIADFGLASLFDPNHRHPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILGELLAGKPIMPGRTEVEQLHKIYKLCGSPSDEYWKKSKLPNATLFKPREPYKRCIREAFKDFPLSALPLIDNLLALDPVERKTASDALRSEFFTTEPYACNPSSLPKYPPSKEMDAKRRDDEVRRLRAPGKTQVDGPKKHRIRDRAVKAFPAPEANAELQTNIDRRRLITHANAKSKSEKFPPPHQDGQLGFPLGSSHHIDPDTVPTDVSFSSTLYTYTKEPFQAWSGPIGNAADIGVPKRKKHTAGDALNLSRPHKGAFKDKVKGKKIIA 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4766g00014 581 ProSitePatterns Serine/Threonine protein kinases active-site signature. 239 251 IPR008271 GO:0004672|GO:0006468
Gabi4766g00014 581 Pfam Protein kinase domain 119 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4766g00014 581 CDD STKc_CDK9_like 119 403 - -
Gabi4766g00014 581 ProSiteProfiles Protein kinase domain profile. 119 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4766g00014 581 Gene3D Transferase(Phosphotransferase) domain 1 202 440 - -
Gabi4766g00014 581 PANTHER CELL DIVISION PROTEIN KINASE 117 407 - -
Gabi4766g00014 581 FunFam probable serine/threonine-protein kinase At1g54610 106 201 - -
Gabi4766g00014 581 MobiDBLite consensus disorder prediction 413 434 - -
Gabi4766g00014 581 SMART serkin_6 119 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4766g00014 581 MobiDBLite consensus disorder prediction 59 77 - -
Gabi4766g00014 581 MobiDBLite consensus disorder prediction 17 38 - -
Gabi4766g00014 581 MobiDBLite consensus disorder prediction 556 581 - -
Gabi4766g00014 581 MobiDBLite consensus disorder prediction 17 86 - -
Gabi4766g00014 581 ProSitePatterns Protein kinases ATP-binding region signature. 125 148 IPR017441 GO:0005524
Gabi4766g00014 581 FunFam probable serine/threonine-protein kinase At1g54610 202 443 - -
Gabi4766g00014 581 Gene3D Phosphorylase Kinase; domain 1 106 201 - -
Gabi4766g00014 581 SUPERFAMILY Protein kinase-like (PK-like) 114 408 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4766g00014 Gabi-Chr4766 168026 173042 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4766g00014 111 443 Core Cell Cycle Gene Families AT5G10270 52.436 1.90e-121 366
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Gabi4766g00014 Pkinase 7.2e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4766g00014 K08819 - gmx:100786837 1001.89