Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4766g00006 ATGAAGAACATTTTCAAAAAGCTTCACATAGGGACCAACAACAACCATGACCCTAACCGATCTAATGAAATTCCCGCCACCTCAGTCTCATCATCATCGTCGTCGTCGTCGTCTTGCGCCACCGATAACCGCACTCTTTCCGGCTCCTCCCCGGCCACTCATTCTTCTTCATTGCCGTCTACGGCGGCGCCTGTTGCTTCCAGTCCGGCAAATGCTGTGGTCAATCGCCAGGACTATTTCTCATCGGAGGAGGAGTTTCAGGTTCAGTTAGCCCTCGCCATAAGCGCTTCCAATTCGGACTTCCCGGCTGATCGCACGCGCCTGAGCTTGGGAGGCCATAGAATTGATTCAACGAGGAATGATGATGGTGTAGCGGAGGCTCTGTCTAGGCAGTACTGGGAATACAATGTGCTTGACTATGAGGAGAAAGTTGTAGATGGTTTTTATGATGTATATGCGCTCGATACCAATTTAGCAATGCAAGGAAAGATGCCATCTCTGACAGATCTCGAAGCAAATCCGGGAAATTCTGGCTTTGAAGCTGTGATAGTTAACCATACAATCGATCCTGCTCTCGAAGAGCTGTTGCAAGTTGCACAATGTATTGCATTAGACTGCCCTGTCACTGAGGTTGTTATTTTGGTACAAAGGCTTTCTGAACTTGTTATGGGTTATATGGGTGGTGCTGTAAAAGATGCTAATATTATATTGGCAAGATGGACAGAAAGAATCACAGAATTGAGGACATCTGTGCCCACGAGTGTGTTGCCTCTGGGCTCCATAAATATTGGGCTCTCCAGACATCGTGCTTTGCTTTTCAAGGTATTAGCTGACAATATCAATATGCCTTGTAAACTGGTAAAAGGTAGTCACTATACTGGTGTTGAGGATGATGCTGTCAACATTATTAAGTTGGAGGATGAAAGGGAGTTTTTGGTTGATCTCATGGCTGCTCCTGGCACACTTATCCCAGCTGATATTTCAAGTGCAAGGGATACTTCCTTTATGCCTTACAATCCCAAGGTTTTGCCAAGTTTACCTTCCGCCAAGGAAACCGATTTCTCTTACACAGGACCAATGCCATCTCATGGTGAAGGTAGTAGTCAAAATTCTGTGATAAAAGGTGGTTCACCACAGTTGAATCAGAAATCATGTTTTGACAAGTCAGAGTACATGCCTTCTAACTTTGATTTGAAAGGAGACAATGGTGTTGGTCCTTCTAAAATACCTAATAGAGTAACTCCTAATCAACTAGAAAATTCTGCACAATTATCCAGTGCTTCTCTCTACAAAGGGACTCGCGGAATGAATGTGGCTGGTGACGGGACTAGACTGAACATTAATGTTGTACCATATAGCCTAAACAGCCCAGATGACTCCCGAAACCTTTTTGCAGATCTTAACCCATTCCAGATTAAAGGAACTGGCAAAACCTCTGCACATAACAAAACAGTGGAAAATAAAGCTCCTGAGCTTCAGAGTACAAGAAATAATACTGTATCTAGTCAACCCCCTGTCCCATTAATGTGGAAGAATCATTATGCTTACAATGAAATCCCCAGGCAAATTAATCATGATCCTAATGAATATAGTCCACCTTTAATAGTTTCCAATAATTCTTCCATATCTGAAAAGATTGATCTCAAAGGATCCAAATCAACATACAATACAAATGTAAATAATTATAGAAATAGTAAAAAATCAGCTCATGTTACTGGTTCGGTTTCACCATCTGGTGTGGGTGAACTGAAGGGGGTTGAGGATCTCAAGGTTGATTGGGATTTGGAAAATTCTCAAAATGCCATGGTAGATGAGATTAAAGTACATGGAAACATTGAAACTGGTCAACTTGACCAGAGGATGCGGCCACACCACAGATTTGTGCGGAAAAACTTGAAATTAGCGGATCCAATGAGTCGCAGCTTGTCAGTTGATTCCACCACAAACAGGGTTGATCAAATATTGGATGATATAGATGTCAGTGAATGTGAGATTCCGTGGGAGGATCTGGATATTGGCGAAAGAATTGGCCTAGGTTCATATGGCGAGGTATACCGTGCTGACTGGAATGGCACAGAGGTTGCTGTGAAGAAATTTTTGGACCAGGATTTTTCAGGAGATGCCTTGTCTGAATTCAAAAGAGAGGTTCGGATAATGCGTAGACTGCGTCATCGTAACGTTGTTCTTTTTATGGGTGCTGTTACTCGTCCTCCCAATCTCTCCATCATTACAGAGTTTCTTCCAAGAGGAAGCTTGTATCATCTTCTTCATCGTCCTAATTGTCAGATTGATGAGAAACAAAGGATAAAAATGGCTCTAGATGTGGCCAGGGGCATGAATTGCTTACACACCAGCACACCTATAATTGTTCACCGAGATCTGAAGTCCCCAAATCTTTTGGTTGATAAGAACTGGAATGTTAAGGTATGTGATTTCGGGTTGTCTCGCTTGAAACACAACACATTTTTGTCATCCAAGTCAACTGCTGGAACGCCTGAGTGGATGGCTCCTGAAGTTCTCCGCAATGAGCCCTCAAATGAGAAGTGTGATGTTTATAGTTTTGGGGTCATCCTATGGGAGCTTGCCACTCTGCGGTTGCCTTGGGGGGAAATGAATCCTATGCAAGTTGTTGGTGCAGTAGGGTTTCAAAACCGTCGCCTTGATATCCCTATGGAAGTTGACCCTTTAGTTGGAAGAATAATCAGGGAATGTTGGTTACAGGATCCAAATTCGCGTCCCTCATTTGCACAACTCACAGTGGCTCTTGAGCCCCTGCAACGTCTAGTTACCCCATCTTATCATGACCAGCTAGCTTCACCAATGCTACAAGAGATTTCTGTAAATTCTACCCCTTGA 2856 0.4335 MKNIFKKLHIGTNNNHDPNRSNEIPATSVSSSSSSSSSCATDNRTLSGSSPATHSSSLPSTAAPVASSPANAVVNRQDYFSSEEEFQVQLALAISASNSDFPADRTRLSLGGHRIDSTRNDDGVAEALSRQYWEYNVLDYEEKVVDGFYDVYALDTNLAMQGKMPSLTDLEANPGNSGFEAVIVNHTIDPALEELLQVAQCIALDCPVTEVVILVQRLSELVMGYMGGAVKDANIILARWTERITELRTSVPTSVLPLGSINIGLSRHRALLFKVLADNINMPCKLVKGSHYTGVEDDAVNIIKLEDEREFLVDLMAAPGTLIPADISSARDTSFMPYNPKVLPSLPSAKETDFSYTGPMPSHGEGSSQNSVIKGGSPQLNQKSCFDKSEYMPSNFDLKGDNGVGPSKIPNRVTPNQLENSAQLSSASLYKGTRGMNVAGDGTRLNINVVPYSLNSPDDSRNLFADLNPFQIKGTGKTSAHNKTVENKAPELQSTRNNTVSSQPPVPLMWKNHYAYNEIPRQINHDPNEYSPPLIVSNNSSISEKIDLKGSKSTYNTNVNNYRNSKKSAHVTGSVSPSGVGELKGVEDLKVDWDLENSQNAMVDEIKVHGNIETGQLDQRMRPHHRFVRKNLKLADPMSRSLSVDSTTNRVDQILDDIDVSECEIPWEDLDIGERIGLGSYGEVYRADWNGTEVAVKKFLDQDFSGDALSEFKREVRIMRRLRHRNVVLFMGAVTRPPNLSIITEFLPRGSLYHLLHRPNCQIDEKQRIKMALDVARGMNCLHTSTPIIVHRDLKSPNLLVDKNWNVKVCDFGLSRLKHNTFLSSKSTAGTPEWMAPEVLRNEPSNEKCDVYSFGVILWELATLRLPWGEMNPMQVVGAVGFQNRRLDIPMEVDPLVGRIIRECWLQDPNSRPSFAQLTVALEPLQRLVTPSYHDQLASPMLQEISVNSTP 951
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4766g00006 951 CDD STKc_MAP3K-like 676 919 - -
Gabi4766g00006 951 Gene3D Phosphorylase Kinase; domain 1 663 747 - -
Gabi4766g00006 951 SMART serkin_6 670 925 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4766g00006 951 MobiDBLite consensus disorder prediction 1 68 - -
Gabi4766g00006 951 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 40 927 - -
Gabi4766g00006 951 FunFam PAS domain-containing protein tyrosine kinase family protein 748 938 - -
Gabi4766g00006 951 ProSitePatterns Protein kinases ATP-binding region signature. 676 698 IPR017441 GO:0005524
Gabi4766g00006 951 ProSiteProfiles Protein kinase domain profile. 670 937 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4766g00006 951 SUPERFAMILY Protein kinase-like (PK-like) 659 942 IPR011009 -
Gabi4766g00006 951 MobiDBLite consensus disorder prediction 349 372 - -
Gabi4766g00006 951 Pfam Protein tyrosine and serine/threonine kinase 671 920 IPR001245 GO:0004672|GO:0006468
Gabi4766g00006 951 MobiDBLite consensus disorder prediction 8 68 - -
Gabi4766g00006 951 FunFam Serine/threonine-protein kinase isoform 1 661 748 - -
Gabi4766g00006 951 PRINTS Tyrosine kinase catalytic domain signature 744 757 IPR001245 GO:0004672|GO:0006468
Gabi4766g00006 951 PRINTS Tyrosine kinase catalytic domain signature 783 801 IPR001245 GO:0004672|GO:0006468
Gabi4766g00006 951 PRINTS Tyrosine kinase catalytic domain signature 849 871 IPR001245 GO:0004672|GO:0006468
Gabi4766g00006 951 PRINTS Tyrosine kinase catalytic domain signature 893 915 IPR001245 GO:0004672|GO:0006468
Gabi4766g00006 951 PRINTS Tyrosine kinase catalytic domain signature 830 840 IPR001245 GO:0004672|GO:0006468
Gabi4766g00006 951 Pfam Ethylene-responsive protein kinase Le-CTR1 125 323 - -
Gabi4766g00006 951 Gene3D Transferase(Phosphotransferase) domain 1 749 932 - -
Gabi4766g00006 951 MobiDBLite consensus disorder prediction 487 506 - -
Gabi4766g00006 951 ProSitePatterns Serine/Threonine protein kinases active-site signature. 789 801 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4766g00006 Gabi-Chr4766 93164 103109 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4766g00006 1 905 MAP Kinase Kinase Kinase AT1G08720 53.155 0.0 878
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Gabi4766g00006 PK_Tyr_Ser-Thr 1.4e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4766g00006 - - aprc:113870732 1389.4