Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4766g00005 ATGATAGTGGAGTCTCATTTGGTGGATGAAGATGGAACAAGAGACCGTTTTCCAGTAAGAATGCGTGTTCTGGCGGTTGATGATAACCAAGTTTGTCTTAATGTGTTGGAGAATATGCTTCGCAAATGTCAATATCATGTTACTACAACTACTCAGTCAATTAAGGCTTTGGAAATTTTAAGAGAAAACAAAAACAAATTTGACCTTGTTATTAGCGATGTAAATATGCCATACATGGATGGATTTAAACTCCTTGAGACAGTGGGACTCGAAATGGACCTACCTGTTGTCATGTTGACAGTATGCAATGATAAAGAGCTAGTAATGAAAGGTGTTATGCATGGTGCTTGTGACTACTTAATCAAACCTCCTCGAATTGACGTGTTGCGAAATATATGGCAACACGTATTGCGTCAGAAGAAGTCACGTTTATTTTGGAATGTTGAGTTGCATACAAAATTCGTTGCAACAGTTAATGAATTGGGCATTGACAAGGCTGTCCCGAAGAAAATCCTTGAGCTAATGAATGTCGAAGGGCTTACAAAAGAAAATATATCAAGCCATCTGCAGAAATATAGGCTCGGTTTAAAGAAGGCAACTCAACAAGATAGTGGGGTTCCTCCATTGGGTCATAGTGGTCCTTATGTGCAAAACAATTTGATGGATAGATATAGAAATTTTAACACCTTGTCTAGATCAGGAAGAATCTTAACCCCTACACAACCTTCATACACATCTGGTGCAATTTTTTGTAGGCTAAACCCCCCTGTAAGCTTGAACATGAGAGGAATTGGTTCCTCTGAACTTGTCCAGCCTACCCATGTTTCAGCAAATCAAAGTTTGAGTTTATCACAGGACATTCCACAATCAATTGAGCTTAACCAATTTCAGCAAATCAACAATACAAAAAATATTGGACAGTTTAACTCAATTGGTGGGTCGAGTGAATTTATGATTTCCTCTGCCTTCCCCAGACGATAA 981 0.3853 MIVESHLVDEDGTRDRFPVRMRVLAVDDNQVCLNVLENMLRKCQYHVTTTTQSIKALEILRENKNKFDLVISDVNMPYMDGFKLLETVGLEMDLPVVMLTVCNDKELVMKGVMHGACDYLIKPPRIDVLRNIWQHVLRQKKSRLFWNVELHTKFVATVNELGIDKAVPKKILELMNVEGLTKENISSHLQKYRLGLKKATQQDSGVPPLGHSGPYVQNNLMDRYRNFNTLSRSGRILTPTQPSYTSGAIFCRLNPPVSLNMRGIGSSELVQPTHVSANQSLSLSQDIPQSIELNQFQQINNTKNIGQFNSIGGSSEFMISSAFPRR 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4766g00005 326 FunFam Two-component response regulator 138 200 - -
Gabi4766g00005 326 SUPERFAMILY CheY-like 20 142 IPR011006 -
Gabi4766g00005 326 Gene3D - 143 199 - -
Gabi4766g00005 326 PANTHER TWO-COMPONENT RESPONSE REGULATOR 21 253 IPR045279 GO:0009736
Gabi4766g00005 326 CDD REC_typeB_ARR-like 23 137 - -
Gabi4766g00005 326 Gene3D - 20 142 - -
Gabi4766g00005 326 Pfam Response regulator receiver domain 23 131 IPR001789 GO:0000160
Gabi4766g00005 326 PIRSF RR_ARR_type-B 138 322 IPR017053 GO:0003677|GO:0003700|GO:0009736
Gabi4766g00005 326 PIRSF RR_ARR_type-B 4 142 IPR017053 GO:0003677|GO:0003700|GO:0009736
Gabi4766g00005 326 SMART REC_2 21 133 IPR001789 GO:0000160
Gabi4766g00005 326 SUPERFAMILY Homeodomain-like 139 198 IPR009057 -
Gabi4766g00005 326 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 138 197 IPR017930 -
Gabi4766g00005 326 NCBIfam myb-like DNA-binding domain, SHAQKYF class 141 194 IPR006447 GO:0003677
Gabi4766g00005 326 ProSiteProfiles Response regulatory domain profile. 22 137 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4766g00005 Gabi-Chr4766 85369 87991 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4766g00005 15 200 Response Regulator Gene Family AT4G31920 55.172 5.59e-84 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gabi4766g00005 Response_reg 1.5e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4766g00005 - K14491 gra:105770301 312.383