Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4758g00002 ATGGTGAGAGGCAGAAGGGAAAGGGACATGGACTCGTTCACCATCAGTGGCACCGACAAGATCGTAAAAGTTGGAGACTGTGTTCTGTTGAGGCCATCAGAAGACTCGAATTCACCCTACGTGGCGCTTGTGGATAGCATCTGGGATGACAACAGAAACAACGTGAATGTTAAGAGTGCTCACACCATTGAAGGAAAGTGTGTCGTTCACTCCTTTAAGGACTATACTAGGCTGGAGAATGTAGGTGCTGAGGATTACTATTGTAGATTTGAGTACGCTGCTGCTACTGGGGCTTTCACACCTGACCGTGTTGCTGTGTATTGCAATTGCGAAATGCCTTATAATCCGGATGACCTCATGATGCAATGTGAGGAGTGCACGGATTGGTACCATCCAGCTTGTGTTGGCATGACTACAGAGGAATCAAAGAAACTAGAACTTTTTATTTGTGTTGAATGCTTAACTTATGCTGCTATGAAGAAACCCCAAGCTACGTCTTCTGCATCACCAGGACCTGACGTCAAGGCGGAGCGCAAGCGGCGGGAGAGACGACCATAA 558 0.4731 MVRGRRERDMDSFTISGTDKIVKVGDCVLLRPSEDSNSPYVALVDSIWDDNRNNVNVKSAHTIEGKCVVHSFKDYTRLENVGAEDYYCRFEYAAATGAFTPDRVAVYCNCEMPYNPDDLMMQCEECTDWYHPACVGMTTEESKKLELFICVECLTYAAMKKPQATSSASPGPDVKAERKRRERRP 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4758g00002 185 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 95 169 IPR013083 -
Gabi4758g00002 185 MobiDBLite consensus disorder prediction 160 185 - -
Gabi4758g00002 185 ProSitePatterns Zinc finger PHD-type signature. 108 153 IPR019786 -
Gabi4758g00002 185 SMART BAH_4 20 103 IPR001025 GO:0003682
Gabi4758g00002 185 ProSiteProfiles Zinc finger PHD-type profile. 105 156 IPR019787 -
Gabi4758g00002 185 Gene3D - 4 61 IPR043151 -
Gabi4758g00002 185 PANTHER OS08G0421900 PROTEIN 6 58 - -
Gabi4758g00002 185 Pfam PHD-finger 107 154 IPR019787 -
Gabi4758g00002 185 SMART PHD_3 107 154 IPR001965 -
Gabi4758g00002 185 SUPERFAMILY FYVE/PHD zinc finger 99 157 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4758g00002 Gabi-Chr4758 15398 19473 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gabi4758g00002 PHD 4.3e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4758g00002 K25868 - gmx:100800993 267.7