Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4758g00001 ATGGTGAGAGGCAGAAGGGAAAGGGACATGGACTCGTTCACCATCAGTGGCACCGACAAGATCGTAAAAGTTGGAGACTGTGTTCTGTTGAGGCCATCAGAAGACTCGAATTCACCCTACGTGGCGCTTGTGGATAGCATCTGGGATGACAACAGAAACAACGTGAATGTTAAGGTGAGATGGTATTATAGGCCTGAAGAATCAATTGGGGGTCGAAGGCAGTTCCATGGTGCCAAGGAACTGTTCCTATCTGACCATTATGATATACAGAGTGCTCACACCATTGAAGGAAAGTGTGTCGTTCACTCCTTTAAGGACTATACTAGGCTGGAGAATGTAGGTGCTGAGGATTACTATTGTAGATTTGAGTACGCTGCTGCTACTGGGGCTTTCACACCTGACCGTGTTGCTGTGTATTGCAATTGCGAAATGCCTTATAATCCGGATGACCTCATGATGCAATGTGAGGAGTGCACGGATTGGTACCATCCAGCTTGTGTTGGCATGACTACAGAGGAATCAAAGAAACTAGAACTTTTTATTTGTGTTGAATGCTTAACTTATGCTGCTATGAAGAAACCCCAAGCTACGTCTTCTGCATCACCAGGACCTGACGTCAAGGCGGAGCGCAAGCGGCGGGAGAGACGACCATAA 654 0.4694 MVRGRRERDMDSFTISGTDKIVKVGDCVLLRPSEDSNSPYVALVDSIWDDNRNNVNVKVRWYYRPEESIGGRRQFHGAKELFLSDHYDIQSAHTIEGKCVVHSFKDYTRLENVGAEDYYCRFEYAAATGAFTPDRVAVYCNCEMPYNPDDLMMQCEECTDWYHPACVGMTTEESKKLELFICVECLTYAAMKKPQATSSASPGPDVKAERKRRERRP 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4758g00001 217 PANTHER OS08G0421900 PROTEIN 6 204 - -
Gabi4758g00001 217 MobiDBLite consensus disorder prediction 192 217 - -
Gabi4758g00001 217 Pfam BAH domain 22 134 IPR001025 GO:0003682
Gabi4758g00001 217 SUPERFAMILY FYVE/PHD zinc finger 131 189 IPR011011 -
Gabi4758g00001 217 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 132 201 IPR013083 -
Gabi4758g00001 217 ProSiteProfiles Zinc finger PHD-type profile. 137 188 IPR019787 -
Gabi4758g00001 217 ProSitePatterns Zinc finger PHD-type signature. 140 185 IPR019786 -
Gabi4758g00001 217 ProSiteProfiles BAH domain profile. 20 135 IPR001025 GO:0003682
Gabi4758g00001 217 SMART PHD_3 139 186 IPR001965 -
Gabi4758g00001 217 SMART BAH_4 20 135 IPR001025 GO:0003682
Gabi4758g00001 217 Gene3D - 4 131 IPR043151 -
Gabi4758g00001 217 Pfam PHD-finger 139 186 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4758g00001 Gabi-Chr4758 15398 19473 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4758g00001 36 137 Core DNA Replication Machinery Family AT4G14700 27.184 7.81e-09 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gabi4758g00001 BAH 1.3e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4758g00001 K25868 - gmx:100810424 343.969