Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4743g00003 ATGTATCCGTCATCGTCATCGTCGTCGTGTTCGTCTTCGTCTTCGCACACCCAAACGGGGCTGACCCGCTATGGCTCTGCCCCTGGGTCTCTGTTGACCAGCACCGTGGATGCCATCATAGGAGTAGGAGTAGGAGGAGGAGGAAGAGGGTCGCGCCCTCAATACTACTCTGGGCCTGGGCCGGGGGGAGAGTCTTCGGAGTCAAGGTTCAAGGAGCAGAGATCTTCTTACGATGATGCTTTTGGGGGAGGATCCTGCTCCCTCCTCCGTCAGAAAAGCTCTCCCCCTGGCTTCCTCACCCATCTCGCCAATCACAATCACAATCACAATCACAATGGAGGAGGAGGAGCGGGAGGGTTCACGATCACAAGAGGCAGCGGAAGCTACAACAGCAGCCAAGAGTTGAAGTCTCAACTCAGCTTCACAGCCCAAGATTCTCTTTCTCTCTCTCACACTCACGCCCACCCCACCACTTCCGACAATACTAATACTACTACAACCACTCATTCTTATGCTGCCGCCGCCTTTGGAATCGAACCCTGGGACACTTCCAATTCCATCGTTTTTTCTGCTCCCCCAAATAAGCGTTCTAAAATTACCAACGACGATCCTGACTTTCTACATTGCCTCGGTGCCTTGGAATCTCAGTTTAGTGTGCCCCAAACATCTCTGGAAATGGCAACGATGGACAAGCTTTTGCATATCCCTGAAGATTCTGTCCCTTGTAAGATCCGTGCTAAGCGAGGCTGTGCTACTCATCCCCGCAGCATTGCAGAACGGGAGAGAAGAACTAGAATAAGTGGGAAGCTCAAGAAGTTACAGGACCTTGTACCTAATATGGATAAGCAAACAAGCTATTCAGACATGCTGGATTTGGCCGTCCAACATATTAAAGGTCTTCAAAATCAAGTCCAGAAGCTTCACAATGAACTTGAGAATTGCACTTGTGGATGCAAACAAAGCGTATAA 969 0.5015 MYPSSSSSSCSSSSSHTQTGLTRYGSAPGSLLTSTVDAIIGVGVGGGGRGSRPQYYSGPGPGGESSESRFKEQRSSYDDAFGGGSCSLLRQKSSPPGFLTHLANHNHNHNHNGGGGAGGFTITRGSGSYNSSQELKSQLSFTAQDSLSLSHTHAHPTTSDNTNTTTTTHSYAAAAFGIEPWDTSNSIVFSAPPNKRSKITNDDPDFLHCLGALESQFSVPQTSLEMATMDKLLHIPEDSVPCKIRAKRGCATHPRSIAERERRTRISGKLKKLQDLVPNMDKQTSYSDMLDLAVQHIKGLQNQVQKLHNELENCTCGCKQSV 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4743g00003 322 FunFam Transcription factor bHLH130 family 251 320 - -
Gabi4743g00003 322 MobiDBLite consensus disorder prediction 1 29 - -
Gabi4743g00003 322 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 253 315 IPR036638 GO:0046983
Gabi4743g00003 322 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 250 300 IPR011598 GO:0046983
Gabi4743g00003 322 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 27 312 - -
Gabi4743g00003 322 Coils Coil 290 317 - -
Gabi4743g00003 322 MobiDBLite consensus disorder prediction 109 137 - -
Gabi4743g00003 322 MobiDBLite consensus disorder prediction 42 78 - -
Gabi4743g00003 322 Gene3D - 251 320 IPR036638 GO:0046983
Gabi4743g00003 322 Pfam Helix-loop-helix DNA-binding domain 255 301 IPR011598 GO:0046983
Gabi4743g00003 322 MobiDBLite consensus disorder prediction 123 137 - -
Gabi4743g00003 322 SMART finulus 256 306 IPR011598 GO:0046983
Gabi4743g00003 322 CDD bHLH_AtbHLH_like 255 307 IPR045239 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4743g00003 Gabi-Chr4743 12302 18585 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4743g00003 88 320 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G05805 53.659 1.05e-69 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi4743g00003 HLH 9.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4743g00003 - - vra:106771988 342.428