Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4743g00002 ATGATGTATCCCTCCTCCACCTCCTCCTCTTCCTCTTCTTCTCATAGCTCCATCACCCAAACGGGCTTGACCCGATATGGATCCGCCCCGGGCTCTCTCCTAACCACTGCCGTCGATGCCCTCATCGCCGACCAGAAATCTTACGGCGGATCCCCATCTTCTTCAGACTTGCTCCGTCAGACAAGCTCGCCCGCTGGCTTCCTCGCCACCACCGCACATCACAATCACAATAGGGGCTTCACAATCACAAATGGCACTGGAAGCTACAACAGCTCTCAATCCCATGCAGTATCAGGATCAAGGTTGAAGTCTCAATTAAGCTTCACAGGCCAAGATTCTCTTTCTCTTTCTCACATATCAGAGGTCACCACTTCCGACAATGCCCATCATGCACCTACACATTCTTATGCTCCTGCTACCGCCTTTGGAATCGAACCCTGGGACGATTCTACTTCCTTTGTGTTTTCTGCTACACCAACTAAGCGTCCTAAAAATAACGATGCTGACATTCTACATTCCCTTGCTACCTTGGAATCTCAGTTTAGTCTGCCACAAACTACTATGGAAATGGCAAACGTGGAGAAGCTATTGCATATTCCTGAAGATTCTGTCCCTTGTAAAATCAGTGCTAAGCGAGGCTGTGCTACTCATCCACGCAGCATTGCAGAAAGGGAGAGAAGAACTAGAATAAGCGGGAAACTGAAGAAATTACAAGATCTTGTGCCTAATATGGATAAGCAAACAAGCTATGCAGACATGCTGGATTTGGCCGTTCAACATATTAAAGGGCTTCAGAGTCAAGTTCAGAAGTTCAACAAAGAACTTGAGCATTGCAGTTGTGGATGCAAACCAAGCACATAA 861 0.4715 MMYPSSTSSSSSSSHSSITQTGLTRYGSAPGSLLTTAVDALIADQKSYGGSPSSSDLLRQTSSPAGFLATTAHHNHNRGFTITNGTGSYNSSQSHAVSGSRLKSQLSFTGQDSLSLSHISEVTTSDNAHHAPTHSYAPATAFGIEPWDDSTSFVFSATPTKRPKNNDADILHSLATLESQFSLPQTTMEMANVEKLLHIPEDSVPCKISAKRGCATHPRSIAERERRTRISGKLKKLQDLVPNMDKQTSYADMLDLAVQHIKGLQSQVQKFNKELEHCSCGCKPST 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4743g00002 286 Gene3D - 215 282 IPR036638 GO:0046983
Gabi4743g00002 286 Pfam Helix-loop-helix DNA-binding domain 219 265 IPR011598 GO:0046983
Gabi4743g00002 286 SMART finulus 220 270 IPR011598 GO:0046983
Gabi4743g00002 286 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 37 272 - -
Gabi4743g00002 286 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 217 280 IPR036638 GO:0046983
Gabi4743g00002 286 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 214 264 IPR011598 GO:0046983
Gabi4743g00002 286 MobiDBLite consensus disorder prediction 1 25 - -
Gabi4743g00002 286 CDD bHLH_AtbHLH_like 219 270 IPR045239 -
Gabi4743g00002 286 FunFam Transcription factor bHLH130 family 215 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4743g00002 Gabi-Chr4743 6434 10433 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4743g00002 57 285 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G05805 55.230 9.32e-71 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi4743g00002 HLH 4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4743g00002 - - qsa:O6P43_023660 328.561