Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4743g00001 ATGATGTATCCCTCCTCCACCTCCTCCTCTTCCTCTTCTTCTCATAGCTCCATCACCCAAACGGGCTTGACCCGATATGGATCCGCCCCGGGCTCTCTCCTAACCACTGCCGTCGATGCCCTCATCGCCGACCAGAAATCTTACGGCGGATCCCCATCTTCTTCAGACTTGCTCCGTCAGACAAGCTCGCCCGCTGGCTTCCTCGCCACCACCGCACATCACAATCACAATACAGGGGGCTTCACAATCACAAATGGCACTGGAAGCTACAACAGCTCTCAATCCCATGCAGTATCAGGATCAAGGTTGAAGTCTCAATTAAGCTTCACAGGCCAAGATTCTCTTTCTCTTTCTCACATATCAGAGGTCACCACTTCCGACAATGCCCATCATGCACCTACACATTCTTATGCTCCTGCTACCGCCTTTGGAATCGAACCCTGGGACGATTCTACTTCCTTTGTGTTTTCTGCTACACCAACTAAGCGTCCTAAAAATAACGATGCTGACATTCTACATTCCCTTGCTACCTTGGAATCTCAGTTTAGTCTGCCACAAACTACTATGGAAATGGCAAACGTGGAGAAGCTATTGCATATTCCTGAAGATTCTGTCCCTTGTAAAATCAGTGCTAAGCGAGGCTGTGCTACTCATCCACGCAGCATTGCAGAAAGGGAGAGAAGAACTAGAATAAGCGGGAAACTGAAGAAATTACAAGATCTTGTGCCTAATATGGATAAGCAAACAAGCTATGCAGACATGCTGGATTTGGCCGTTCAACATATTAAAGGGCTTCAGAGTCAAGTTCAGAAGTTCAACAAAGAACTTGAGCATTGCAGTTGTGGATGCAAACCAAGCACATAA 864 0.4722 MMYPSSTSSSSSSSHSSITQTGLTRYGSAPGSLLTTAVDALIADQKSYGGSPSSSDLLRQTSSPAGFLATTAHHNHNTGGFTITNGTGSYNSSQSHAVSGSRLKSQLSFTGQDSLSLSHISEVTTSDNAHHAPTHSYAPATAFGIEPWDDSTSFVFSATPTKRPKNNDADILHSLATLESQFSLPQTTMEMANVEKLLHIPEDSVPCKISAKRGCATHPRSIAERERRTRISGKLKKLQDLVPNMDKQTSYADMLDLAVQHIKGLQSQVQKFNKELEHCSCGCKPST 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4743g00001 287 SMART finulus 221 271 IPR011598 GO:0046983
Gabi4743g00001 287 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 218 281 IPR036638 GO:0046983
Gabi4743g00001 287 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 39 273 - -
Gabi4743g00001 287 FunFam Transcription factor bHLH130 family 216 284 - -
Gabi4743g00001 287 CDD bHLH_AtbHLH_like 220 271 IPR045239 -
Gabi4743g00001 287 MobiDBLite consensus disorder prediction 1 29 - -
Gabi4743g00001 287 Gene3D - 216 283 IPR036638 GO:0046983
Gabi4743g00001 287 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 215 265 IPR011598 GO:0046983
Gabi4743g00001 287 Pfam Helix-loop-helix DNA-binding domain 220 266 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4743g00001 Gabi-Chr4743 6434 10437 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4743g00001 57 286 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G05805 55.000 1.15e-70 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi4743g00001 HLH 4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4743g00001 - - qsa:O6P43_023660 322.398