Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4742g00002 ATGGCTGATGGTTTTGAACCTTACCATGTCCCACAACAAAGCAGAAGAGAGAAGCTAAGAGTTTTGTCTCAGAATCAAACCGGTTTTGTTGAATCCACCCTTAACTTTCATCACAGTTGTGTAACTTTAACCCCTCTCTACGATCCTTCACTGTTTTCCTCTGATTTGTTATCTTGTGCAAACCAACAAGGTCACGGGTTTCACAGTAACCAGAACAACGTTCCTATTTCTGCTAGCAACGAAGCTTGCAAAGCAAACAAGGGTTGTGCTTTGAAGGAAGAAGGATACAATTTGATGATGGGGTTTTCAGGTGGAGGAGGTGTTGTGAATGGTTCTTCTTCTTCTTCGTCTTCTTCGGTTTCACACCATGCTTACTTGGATCCAGGTGCTGCAATTCAAGTTATTAATAGTAACCCTTTTCTGTACCAGGCTCAAAGCCTTCAGAACCTTCGGGAATTTGATCAGAGTTACAATGATGGTAGTGAGATAATGGTGTTCAAGCCTGAACCATTGTCTTTGTCTTTGTCATCCCATAACAACAATCGTAACCCATTGGAGCTTAATCTTCAGCGATATGGGTCTGTTATTTATGGTGATAAGGTTGGTGGTGGTGGTGGTGGCTGTGTTATTCCGGGTTTGGTTGGAGGAGGTAATGTTTCTGTTTCAAATGAAGTTTCGGTGAATTCAGTTCCTCTTGGACCGTTTACGGGTTATGCTTCAATATTGAAGGGATCGAGGTTCTTGAAGCCTGCACACCAATTGTTGGAAGAGCTTTGTGTTGTTGGGGTTCGTGGAATTTATTCTGAGAAGATTACTTCTGATGCATCATTGATGGAACCTGCTACAGAGAGTTTAAGTGCTAGTGGAATTGTTGTGGATGATCCACTTGGGGATGGGAATGAGGGTGGGAGGAAGAAGTCCAGGCTATTAACCATGCTTGATGAGGTTTACAGGAGGTACAGGCATTACTATCAGCAGATTCATGCAGTAGTAACTTCATTTGAGTGTGTTCCTGGCCTCAGTAATGCAGCCCCATATGCAAGTTTTGCTATAAATGTCATGTCCAAACATTTCAGATGCTTGAAGAATGCAATTACTGACCAGCTTCAGTTTATCAATAAGGCTCATTTTCAAATAAGCAACAGGAAAGATGAATCTTCAAGGTTTAACAACAGTGATAGAGGCCCTTACAGCCAAAGACCAGGGTTTCTTGAGCATCAACAACCTGTTTGGCGACCTCAAAGAGGACTACCTGAGCGTGCTGTGAGTGTTCTCAGGGCATGGTTGTTTGAACACTTTCTACACCCTTATCCTACGGATACGGACAAGCTAATGTTGGCTAAACAAACTGGTCTATCGCGCAGCCAGGTGTCTAATTGGTTTATTAATGCAAGAGTAAGGCTTTGGAAACCAATGGTGGAAGAAATACATATGCTAGAATCACAGCAAGCTCCGAAAAAATCACAAAGAGAAGAACAAAGTAGGAACACTTTGAGTGATCATTTACCTTTAGATAACACTCTTGTTACTGAGAATCCGTCTACCACCACATATAAGTTTCAGAATGTTCCTTATAAACGTACTAGAAATGAACTTAGTAGTATCCCATTGAGGAGGCAAGAACAACTGAATCAGACCAACACAAGCAATGAGCCAGTGGGTGTTGTTGGAGTGAGCATTGGGAATAGTGCAAGTAATGGTGTCTCTCTGACACTTGGTCTTCATCAAAATCATGGGATTGGGTTATCTGAGCCCTTTACCATGAGTGAAGCTCAGCGTTTTGGTCTTGCCCTTGAACCTGAGGGCTATGTTGCAAGTGGTTTTGAATCACAAAATCGACATTTTGGAAGAGATGTTATTGGAGGGCAACTGTTGCATGACTTTGTAGGCTGA 1893 0.4231 MADGFEPYHVPQQSRREKLRVLSQNQTGFVESTLNFHHSCVTLTPLYDPSLFSSDLLSCANQQGHGFHSNQNNVPISASNEACKANKGCALKEEGYNLMMGFSGGGGVVNGSSSSSSSSVSHHAYLDPGAAIQVINSNPFLYQAQSLQNLREFDQSYNDGSEIMVFKPEPLSLSLSSHNNNRNPLELNLQRYGSVIYGDKVGGGGGGCVIPGLVGGGNVSVSNEVSVNSVPLGPFTGYASILKGSRFLKPAHQLLEELCVVGVRGIYSEKITSDASLMEPATESLSASGIVVDDPLGDGNEGGRKKSRLLTMLDEVYRRYRHYYQQIHAVVTSFECVPGLSNAAPYASFAINVMSKHFRCLKNAITDQLQFINKAHFQISNRKDESSRFNNSDRGPYSQRPGFLEHQQPVWRPQRGLPERAVSVLRAWLFEHFLHPYPTDTDKLMLAKQTGLSRSQVSNWFINARVRLWKPMVEEIHMLESQQAPKKSQREEQSRNTLSDHLPLDNTLVTENPSTTTYKFQNVPYKRTRNELSSIPLRRQEQLNQTNTSNEPVGVVGVSIGNSASNGVSLTLGLHQNHGIGLSEPFTMSEAQRFGLALEPEGYVASGFESQNRHFGRDVIGGQLLHDFVG 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4742g00002 630 ProSiteProfiles 'Homeobox' domain profile. 408 471 IPR001356 GO:0003677
Gabi4742g00002 630 MobiDBLite consensus disorder prediction 383 402 - -
Gabi4742g00002 630 CDD homeodomain 411 472 IPR001356 GO:0003677
Gabi4742g00002 630 Gene3D - 414 476 - -
Gabi4742g00002 630 Pfam Homeobox KN domain 428 467 IPR008422 GO:0003677|GO:0006355
Gabi4742g00002 630 SUPERFAMILY Homeodomain-like 413 478 IPR009057 -
Gabi4742g00002 630 MobiDBLite consensus disorder prediction 499 515 - -
Gabi4742g00002 630 MobiDBLite consensus disorder prediction 480 515 - -
Gabi4742g00002 630 FunFam BEL1-like homeodomain protein 9 414 476 - -
Gabi4742g00002 630 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 116 491 - -
Gabi4742g00002 630 Pfam Associated with HOX 241 366 IPR006563 -
Gabi4742g00002 630 SMART prehox3 236 367 IPR006563 -
Gabi4742g00002 630 SMART HOX_1 411 475 IPR001356 GO:0003677
Gabi4742g00002 630 MobiDBLite consensus disorder prediction 480 498 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4742g00002 Gabi-Chr4742 77015 81860 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4742g00002 154 630 Homeobox Transcription Factor Family AT5G02030 48.282 1.74e-127 386
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Gabi4742g00002 POX 3.5e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4742g00002 - - vvi:100266680 748.814