Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi473g00003 ATGTGTGTGCAGGACGCTGATCAAGATGCCCAAGATATGAACAACATGGACAATACAAAAAAGTTATGGCCTTTGCATGGTGAGCTTTTGCTTACCCAGAAAGAGAATTTGGAAAAGGAATCTTCTTTGAGAACTTCAAGTGGCGACAGGATCAGTATTGAAAATTCATTTCCTCTGGAAAGCATAGGTGAGGATGCAGTGGTTGCAGACAAGAAACAGAACCTGATGAATTATGTCCCTGATCTACGGTCGGGAGAGTGGTCTGATATTGGAGAACGCCCTTACATGGAGGATACTCACATATGCATTGGAGATTTGGCAAAAAAGTTTGATTGTAACATACACTCTGAGGAGGCTGTTTCCTTTTATGGGGTATTTGATGGACATGGAGGGAAGAGTGCTGCACAATTTGTCCGTGATCATCTGCCAAGAGTTATCGTTGAGGATGTTAACTTTCCTTTGGAACTAGAGAAGGTGGTCAAAAGGTCATTTTTGGAGACTGATGCAGCATTTGCAAAGACATCCTCTTGTGAATGTTCCCTTTCTTCTGGTACAACTGCGCTAACTGCATTTATATTTGGAAGGTCTCTACTTGTAGCCAATGCTGGAGATTGCCGAGCTGTCTTGTCCCGTCATGGAAGGGTTATAGACATGTCCCAAGATCATAAGCCAAACTGCACCAAAGAGAGGATGCGGATTGAGTCCCTTGGTGGATTCATTGATGATGGTTACCTGAATGGCCAGTTAGGTGTCACTCGTGCTCTAGGTGATTGGCACCTTGAAGGAATGAAGGAAATGAGTGAAAGAGGAGGACCACTAAGTGCTGAACCTGAATTTAAATTGATTACATTGACCAAAGAAGATGAATTCTTGATAATTGCCAGTGATGGAATCTGGGATGTTTTTAGTAGCCAAAATGCTGTAGATTTTGCTCGAAGGAGACTTCAAGAGCACAATGATGAGAAAAAATGTTGCAAGGAAATGGTACAGGAAGCAATCAAGAGGGGATCAACAGATAACTTGACAGTTTTGATGGTATGTTTTAACTCAGATCCACCACCACCTGTGGTTGTAAAAAGAACAAGAGTAAGGAGAAACATATCTGCTGAGGGACTTGAGAATCTGAAATGCCTGCTAGAAGGATAG 1146 0.4232 MCVQDADQDAQDMNNMDNTKKLWPLHGELLLTQKENLEKESSLRTSSGDRISIENSFPLESIGEDAVVADKKQNLMNYVPDLRSGEWSDIGERPYMEDTHICIGDLAKKFDCNIHSEEAVSFYGVFDGHGGKSAAQFVRDHLPRVIVEDVNFPLELEKVVKRSFLETDAAFAKTSSCECSLSSGTTALTAFIFGRSLLVANAGDCRAVLSRHGRVIDMSQDHKPNCTKERMRIESLGGFIDDGYLNGQLGVTRALGDWHLEGMKEMSERGGPLSAEPEFKLITLTKEDEFLIIASDGIWDVFSSQNAVDFARRRLQEHNDEKKCCKEMVQEAIKRGSTDNLTVLMVCFNSDPPPPVVVKRTRVRRNISAEGLENLKCLLEG 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi473g00003 381 ProSitePatterns PPM-type phosphatase domain signature. 122 130 IPR000222 GO:0043169
Gabi473g00003 381 Gene3D - 66 351 IPR036457 -
Gabi473g00003 381 FunFam Probable protein phosphatase 2C 22 67 351 - -
Gabi473g00003 381 SUPERFAMILY PP2C-like 75 350 IPR036457 -
Gabi473g00003 381 SMART PP2C_4 73 346 IPR001932 -
Gabi473g00003 381 CDD PP2Cc 83 348 IPR001932 -
Gabi473g00003 381 ProSiteProfiles PPM-type phosphatase domain profile. 83 348 IPR001932 -
Gabi473g00003 381 PANTHER PROTEIN PHOSPHATASE 2C 66 346 IPR015655 GO:0004722|GO:0006470
Gabi473g00003 381 Pfam Protein phosphatase 2C 95 340 IPR001932 -
Gabi473g00003 381 Coils Coil 308 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi473g00003 Gabi-Chr473 11891 14613 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi473g00003 34 381 PP2C-type Phosphatase Gene Family AT2G25620 55.556 3.62e-132 382
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBP Gabi473g00003 PP2C 7.6e-71 CL0238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi473g00003 K14803 - gmx:100813157 590.882