Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4737g00001 ATGGCTTCCAATAAGATTCTCTTCTCCATTATCCTAATTATCTTCCTCTTTCTTGCAACTACGGAATCACAAGGTGACCCTTTTTATCTATACCAAGATTGCTCAAGCTTAAAAACCAATCCCAACACCTCCTTCCAATTAGACCTAAAATCACTCCTTTCTACCTTACCATCTAGAGCAATCGGTGACACCCAATTCTTCAACACAACATTCACTGGCAAAACTCCCTCTGACTCAATCTATGCTATGTTCATGTGTAGGGGTGACATCTCTTCCTCCTCTAATCTCTGTCAACAGTGTGTTCTAAGCGCAACACACAGACTATCCTCGGATTGCTCCTTGTCCAAACAAGCTGTGATTTGGTTTGAAGAATGCATGGTTAGGTATTCAACTACTTATTTCTTCTCATCCGTGTCCACAACACCAAAATTCCCAATGTGGAACACAGCCAATGTCTCAAACCCGAAAAGCTTCATGAGTTTATTGTTTATGACCATGAATGAAACTGCAGATGAAGCAGCACTTCATCCTATAGGCCACAAGAACTATGCAACAAAGGAAGTATCAATATCTGAATTTCAGACCCTTTACTTTCTAGCTCAATGCACACCAGACCTGTCACCCCACGATTGCAGAACATGTCTAGGTGTAATCATGGAGGACATCAGAGGGTGCTGTGGGGGAAGTTTAGGAGGGAGAGTTCTATGTTCAAGTTGTAATATTAGATATGAATTGTACCCTTTTTATCACACTTCACCAACATCTACATCACCAGAGCTAGTTCCTGCAACAAAAACTTCCGATGCAGATTCAAGATTTTCAGATAATCCTGTTTATCTTTCTCACAATTGTTCAAGTAACAAAACCTTCACTTCAAACAGCACTTTCCAAATTCACCTCAAGACCCTTTTGTCTTATTTGTCTTCCAATGCCACCACTGGCAAGAAAGTGTTCTCTGAGATTAGTATTCAAGACACAGTGCATGGCCTCTTCATGTGCAGAGGTGATGTTCCCTCTGTTCTCTGTGGAAATTGTGTCATAAACGCAACCAATCGAATATCCTCAGAGTGTTCCTCGTTCCAAGAAGCTATAATTTGGTACAGTCACTGTTTGCTACGTTATTCATATCGAAATTTCTTCTCCAAAGTGAACAAAAGTCCTATGTTTTCTGAATTGAATATTACCTCAAGACCAAGCAAGGAACAAAACTTCTTCACTATTATATTAGCGAAGACGTTAGATCAATTGGCAATTGAGACTGGGGACAGTGATGAGAAATTTGGAACAAAATCAGCAAAATTGAATGACTTACAAACCCTTTATAGTCTTGCTCAGTGTACGCAGGATTTGTCAGGTGATGATTGCAGGGGTTGCTTAGGAGATGTGATTGGAACAGCAATTCCATGGTCTCGTTTGGGAAGTGTAGGGGGAAGAGTTCTGTATCCTAGCTGCAATCTCAGGTTTGAATTGCTCGAATTTTACATGGATGGAAACCAAACTCAGCTGCAAAGACCACCTAAGAGTATTGTGAAAAAGAGAACAGATGGTCGGTTGCGAACAATTATATGGATTGCAGTGCCCACAATTGTTCTTGTGCTGGTCTTCTCTTTTGGTTACTATTTGCTAAAGAGAAAAGCAAGTAAAAGCTACAAGACTATTCTCGAAGAAAACTTTGGTCATGAAAGTGCCACTTTAGAGCCATTGCAATTTGATTTGGCTGTAATTGAAGCAGCAACCAACAATTTTTCATATCAGAACAGGATTGGCAAAGGTGGATTTGGAGAAGTTTACAAGGGTATTCTTCTTGATGGACGACAAATAGCTGTTAAGAGATTGTTTATAAGTTCAACGCAAGGAGTAAATCAGTTCAAGAATGAAGTGTTATTGATAGCCAAGCTTCAACATAGAAATCTAGTGGCATTCATCGGTTTTTGCCTTGCAGAACACGAGAAAATACTTATTTGTGAATATGTGCCAAATAAGAGCCTCAATTACTTTTTATTTGATTCTCAACGGCAAAGGTTGTTAAGCTGGTATGAGCGTTACAATATTATAGGAGGAATTGCTCAAGGAATTCTTTATTTACATGAACATTCTCGACTCAAAGTTATACATCGTGATCTCAAACCTAGTAATGTTCTCTTAGATGAAAATATGATCCCAAAAATTTCAGATTTTGGTCTAGCTAGAATTGTAGAAATAAATCAAGACCAAGAAAATACAAATATAATTGCAGGAACATATGGTTATATGTCTCCAGAATATGCAATGCTGGGGCAATTTTCTGAGAAATCAGATATTTACAGCTTTGGAGTGATGGTTTTAGAGATTATTACTGGGAAAAAGAATCTGAATTTTTATGAAGCACATCGTGTTGCTGGTGGGCTCTTGAGTGATGTTTGGAGACACTGGAAGGATGAGACATTGTTAAGCTTATTGGATCCAAATATTAAGGAAAATTATTCTGAAAATGAAGTCATTAAGTGTATTCAGATTGGTTTATTATGTGTTCAACAAAACCCTGGTGATAGACCTACAATGGTAACAGTTGTTTCATATCTCAACAGTCAGTTTATTGAATTGCCTACTTTTCAAGAACCTGCATCTTTCTTGCACGGTAGAATGGATCCAACAACAATTGCAGAGGAATCAAGTTCCAACCAATTTATCAACAATTCCATGCCATTCTCTATTAATGAATTCTCTGCAAGTGAATTTCTTCCCCGATAG 2730 0.3832 MASNKILFSIILIIFLFLATTESQGDPFYLYQDCSSLKTNPNTSFQLDLKSLLSTLPSRAIGDTQFFNTTFTGKTPSDSIYAMFMCRGDISSSSNLCQQCVLSATHRLSSDCSLSKQAVIWFEECMVRYSTTYFFSSVSTTPKFPMWNTANVSNPKSFMSLLFMTMNETADEAALHPIGHKNYATKEVSISEFQTLYFLAQCTPDLSPHDCRTCLGVIMEDIRGCCGGSLGGRVLCSSCNIRYELYPFYHTSPTSTSPELVPATKTSDADSRFSDNPVYLSHNCSSNKTFTSNSTFQIHLKTLLSYLSSNATTGKKVFSEISIQDTVHGLFMCRGDVPSVLCGNCVINATNRISSECSSFQEAIIWYSHCLLRYSYRNFFSKVNKSPMFSELNITSRPSKEQNFFTIILAKTLDQLAIETGDSDEKFGTKSAKLNDLQTLYSLAQCTQDLSGDDCRGCLGDVIGTAIPWSRLGSVGGRVLYPSCNLRFELLEFYMDGNQTQLQRPPKSIVKKRTDGRLRTIIWIAVPTIVLVLVFSFGYYLLKRKASKSYKTILEENFGHESATLEPLQFDLAVIEAATNNFSYQNRIGKGGFGEVYKGILLDGRQIAVKRLFISSTQGVNQFKNEVLLIAKLQHRNLVAFIGFCLAEHEKILICEYVPNKSLNYFLFDSQRQRLLSWYERYNIIGGIAQGILYLHEHSRLKVIHRDLKPSNVLLDENMIPKISDFGLARIVEINQDQENTNIIAGTYGYMSPEYAMLGQFSEKSDIYSFGVMVLEIITGKKNLNFYEAHRVAGGLLSDVWRHWKDETLLSLLDPNIKENYSENEVIKCIQIGLLCVQQNPGDRPTMVTVVSYLNSQFIELPTFQEPASFLHGRMDPTTIAEESSSNQFINNSMPFSINEFSASEFLPR 909
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4737g00001 909 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 277 378 - -
Gabi4737g00001 909 SUPERFAMILY Protein kinase-like (PK-like) 565 885 IPR011009 -
Gabi4737g00001 909 Gene3D Phosphorylase Kinase; domain 1 543 657 - -
Gabi4737g00001 909 ProSiteProfiles Gnk2-homologous domain profile. 278 379 IPR002902 -
Gabi4737g00001 909 ProSiteProfiles Gnk2-homologous domain profile. 140 248 IPR002902 -
Gabi4737g00001 909 SMART serkin_6 582 859 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4737g00001 909 Pfam Salt stress response/antifungal 402 489 IPR002902 -
Gabi4737g00001 909 Pfam Salt stress response/antifungal 34 131 IPR002902 -
Gabi4737g00001 909 Pfam Salt stress response/antifungal 153 246 IPR002902 -
Gabi4737g00001 909 Pfam Salt stress response/antifungal 284 375 IPR002902 -
Gabi4737g00001 909 FunFam Cysteine-rich receptor-like protein kinase 25 142 248 - -
Gabi4737g00001 909 Pfam Protein tyrosine and serine/threonine kinase 584 854 IPR001245 GO:0004672|GO:0006468
Gabi4737g00001 909 ProSitePatterns Protein kinases ATP-binding region signature. 588 610 IPR017441 GO:0005524
Gabi4737g00001 909 ProSiteProfiles Gnk2-homologous domain profile. 385 493 IPR002902 -
Gabi4737g00001 909 ProSiteProfiles Protein kinase domain profile. 582 859 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4737g00001 909 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 265 887 - -
Gabi4737g00001 909 FunFam Cysteine-rich receptor-like protein kinase 25 387 493 - -
Gabi4737g00001 909 ProSitePatterns Serine/Threonine protein kinases active-site signature. 703 715 IPR008271 GO:0004672|GO:0006468
Gabi4737g00001 909 CDD STKc_IRAK 588 855 - -
Gabi4737g00001 909 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 543 657 - -
Gabi4737g00001 909 Gene3D Transferase(Phosphotransferase) domain 1 658 861 - -
Gabi4737g00001 909 FunFam cysteine-rich receptor-like protein kinase 10 658 861 - -
Gabi4737g00001 909 ProSiteProfiles Gnk2-homologous domain profile. 27 134 IPR002902 -
Gabi4737g00001 909 Gene3D - 27 134 IPR038408 -
Gabi4737g00001 909 Gene3D - 276 379 IPR038408 -
Gabi4737g00001 909 Gene3D - 388 493 IPR038408 -
Gabi4737g00001 909 Gene3D - 140 248 IPR038408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4737g00001 Gabi-Chr4737 13396 17382 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4737g00001 274 909 Receptor kinase-like Gene Family AT4G05200 42.988 2.20e-175 523
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi4737g00001 PK_Tyr_Ser-Thr 6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4737g00001 - - gmx:100806048 1201.81