Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4734g00001 ATGGCGGGTCAGAGCTCCAATGAAGGCTCCAGTATTGGCAATATTTCAGAGGGTTCAGAATCAACTGTTCAGCTCAATATCAAGACTCTAGATTCTCGTATCTACAGTTTTCAAGTGGAAAAAAATATGCCTGTTTCGTTGTTCAAAGAGAAAATTGCAAATGAAATCGGTGTCCCAGTAAGTCAGCAACGGCTGATTTTTAGAGGAAAGGTCTTAAAGGATGAGCACGTTCTTTCTGAGTATCATGTTGAGAATGGGCATACATTGCATTTAGTTGAAAGACAACCAAATCAGTCACAAGCTTCTGGTACGAGTTCTGGGGAGCCAACTGGTACTGGTACAAGTGGTAACCGAGGTAATGATGTAGGCTCAGGGGCTTCTCGTAATCGTGTTGGGCAAATTTCGCACAGTGTTGTTCTTGGGACTTTTAATGTGGGGGAACAAGGTGAAGGCATTGTTCATGACCTCAGTCGGGTTATTGGGGCAGTTTTGAATTCTATTGGAAATGGTGGCCAGAACACAATTAGTGTTCCTAATGCTACACAAACGTCTTCGGCTCCACCAGGGAATGGAACTGAAGAAATGAATGCTGGAAATCAAAACCTAGCAGGAAATCAGGCACAGTCCGGGCAGACATTTCCTGTTCAAGCATTCCAATCTCTGTCTCAAGTTGTTCAGATTCCTATGGCTGCAGGAGCTATACCCGCTCCTTCTCTCAATGCACCAATTCCTCATTCATTGAACACACTGTCTGAGTTTATAAATCACATGGAACAGACACTATCACAATATGGTTATGCACCGAATCTGTCTTCAACTAATCCTGGAAATCAACGAGTTGAATTGCCATCCAATGCACAAGGGTTGCCGACACTTGAAGCGCTAAGCACTGTCTTGCGTCGTGCAGAACAGTTGCTTGGTGGTCACGCTGTTGCTGCGCTATCTCACATTGCAGGACGATTGGAGAGAGAGGGTACTTCTTCTGATCTACATATGAGGGGTCAAATACAGTCAGAGTCAATGCAAATAGGACTTGCTATGCATCATTTGGGTGCACTTCTACTTGAACTCGGCCGAACAATGTTGACACTGCATATGGGACAGGCTTCTGCAGAATCTGTTGTTAATGCTGGACCAGCAGTTTATATTTCTCCTTCAGGGCCAAATCCTATTATGGTGCAGCCCTTTCCACATCAGACAAGCTCCCTCATTGGTGGTCCTGTTCCTTCTTCAACTCCTGCAACATTAGGCGGTACTGGGAGTGCTCCTAGGAACGTAAACATTCATATACATGCTGGTGCGTCTCTTGCACCAATTCTTTCAGCAATCAGTTCTAGGCCAAATAATGGGGAAGGGACAAGAGGTGAACACCGAAATGAGCCTGGCTCTAGTGATTCAAGTTCTGCACGGGTATTACCTATTAGAAATGTCATAGCAGGAACTCTTCCATCACACCCTCCTGGTGTTGGAGTTGCTAGTAGCACACAAACTGGTTTTGGTGTTTCTATTTCACAGCCACCACCTGACTCAGCTCCATTGTCGTCTGTTAGAAACTTTGTTGGTCAAATGGAATCAACTAGCAGGGACTTGTCTTCTGGGTCTGAATCAAGACCTGCTCTGGGAAATGAACGGCTAGATACCATAGGGATGAATGGCTTTGGGGCTGCCAGTACATCTTCAGCTGGCTGTGCATCTGAAAGTGGGGTACAGAAGCCCCAAAATGAGGCAGTCCAAACCTGTAGTAATGATGATAGAGATGTTTTGGTCGACAAATTTGTTTCGAGTTCTTCCAATCAAGATTTGCAAAGTTGTTCTAGTGGAGAAACAATAGTAAAATCAGAAAAAGTACATGATGCTCCATCTGTAAGTGAAAGACAAGATGTAACTGTACCTGCCAAAGCTGCTCCACTAGGATTGGGTATGAGTGGTTTGGAACGCAAGAGGCGAACAAGACTTCATCCTCCTGTAAGTAAAGGTGCTGATGATGGATCATCCAGTTCTTCTGTCAATCAAAGTCAGCAAACCATAACAGATGGTCAGCGGATATTGCAAAATCTTGCAAGTCATGGATCTGCTGTGAATTCGAGAAATGCCAATGGACCATCCGAGCGGCCCTTTCCCTCTAGTGATAGCCAGATTGATGTGGCTGGTTTGATGTCTCAGGCTTTACATAGCCCTGCTTCACAACAAACCAGAGTCAACTCACCTGATGTCTTGAGGAATATGTTGCAGCAGTTCACACAAAGCCCACAGTTAATGAGCGCGGTGGATCAAATGGCACAACAGTTGGGCAGTCAAGATATGGGTAATATGTTGCAGCAGTTCACACAGAACCCACAGTTAATGAACACGGTAGATCAAATGGCACAACAGTTCGGCAGTCAAGATGTGGGGAGTATGTTTGCTGGAATGGAAAGAGGACAGGGTGGTGGTATTGATTTGTCAAGGATGGTTCAACAGATGATGCCTATTGTATCTCGAGCCTTTGGTGGGGGAATTCCTCCCTCACCATTCTCTGCTGCTGAACCAGAACCCCATGCACCAAACAGAGATGGAACACTTAACAGAGATGAAAATTCTGATGATCAAAGTTTACAGCTTGACCTTCAACTAGTGGCAGAGAGGATTGAGCGCCTGAGTCCACCTACAGATGTTTTCCGTGCTGTAGCTGAACATGCTGTCGAGCTGTCTGGCGGTGGAAATATTTCTGATGATCTTATAAATGAGTTATGCAACAATGAGAGTCTTGTCAGCGAGTATGTGGAGATGTTGCGATATGATGCAAGTCAGCTACTTAAGGGAGATTCTGAGCCGGACAACTCCTAA 2826 0.4508 MAGQSSNEGSSIGNISEGSESTVQLNIKTLDSRIYSFQVEKNMPVSLFKEKIANEIGVPVSQQRLIFRGKVLKDEHVLSEYHVENGHTLHLVERQPNQSQASGTSSGEPTGTGTSGNRGNDVGSGASRNRVGQISHSVVLGTFNVGEQGEGIVHDLSRVIGAVLNSIGNGGQNTISVPNATQTSSAPPGNGTEEMNAGNQNLAGNQAQSGQTFPVQAFQSLSQVVQIPMAAGAIPAPSLNAPIPHSLNTLSEFINHMEQTLSQYGYAPNLSSTNPGNQRVELPSNAQGLPTLEALSTVLRRAEQLLGGHAVAALSHIAGRLEREGTSSDLHMRGQIQSESMQIGLAMHHLGALLLELGRTMLTLHMGQASAESVVNAGPAVYISPSGPNPIMVQPFPHQTSSLIGGPVPSSTPATLGGTGSAPRNVNIHIHAGASLAPILSAISSRPNNGEGTRGEHRNEPGSSDSSSARVLPIRNVIAGTLPSHPPGVGVASSTQTGFGVSISQPPPDSAPLSSVRNFVGQMESTSRDLSSGSESRPALGNERLDTIGMNGFGAASTSSAGCASESGVQKPQNEAVQTCSNDDRDVLVDKFVSSSSNQDLQSCSSGETIVKSEKVHDAPSVSERQDVTVPAKAAPLGLGMSGLERKRRTRLHPPVSKGADDGSSSSSVNQSQQTITDGQRILQNLASHGSAVNSRNANGPSERPFPSSDSQIDVAGLMSQALHSPASQQTRVNSPDVLRNMLQQFTQSPQLMSAVDQMAQQLGSQDMGNMLQQFTQNPQLMNTVDQMAQQFGSQDVGSMFAGMERGQGGGIDLSRMVQQMMPIVSRAFGGGIPPSPFSAAEPEPHAPNRDGTLNRDENSDDQSLQLDLQLVAERIERLSPPTDVFRAVAEHAVELSGGGNISDDLINELCNNESLVSEYVEMLRYDASQLLKGDSEPDNS 941
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4734g00001 941 MobiDBLite consensus disorder prediction 170 206 - -
Gabi4734g00001 941 MobiDBLite consensus disorder prediction 691 711 - -
Gabi4734g00001 941 ProSiteProfiles Ubiquitin domain profile. 23 98 IPR000626 GO:0005515
Gabi4734g00001 941 SMART ubq_7 23 94 IPR000626 GO:0005515
Gabi4734g00001 941 MobiDBLite consensus disorder prediction 92 130 - -
Gabi4734g00001 941 MobiDBLite consensus disorder prediction 849 863 - -
Gabi4734g00001 941 CDD Ubl_ubiquitin_like 25 92 - -
Gabi4734g00001 941 SUPERFAMILY Ubiquitin-like 19 97 IPR029071 -
Gabi4734g00001 941 MobiDBLite consensus disorder prediction 1 21 - -
Gabi4734g00001 941 PANTHER LARGE PROLINE-RICH PROTEIN BAG6 766 940 - -
Gabi4734g00001 941 Gene3D - 13 107 - -
Gabi4734g00001 941 MobiDBLite consensus disorder prediction 660 675 - -
Gabi4734g00001 941 FunFam Large proline-rich protein BAG6 15 108 - -
Gabi4734g00001 941 MobiDBLite consensus disorder prediction 832 863 - -
Gabi4734g00001 941 MobiDBLite consensus disorder prediction 597 675 - -
Gabi4734g00001 941 Pfam Ubiquitin family 25 95 IPR000626 GO:0005515
Gabi4734g00001 941 MobiDBLite consensus disorder prediction 443 470 - -
Gabi4734g00001 941 PRINTS Ubiquitin signature 33 53 IPR019956 -
Gabi4734g00001 941 PRINTS Ubiquitin signature 54 74 IPR019956 -
Gabi4734g00001 941 PRINTS Ubiquitin signature 75 96 IPR019956 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4734g00001 Gabi-Chr4734 20258 30972 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4734g00001 23 94 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 40.278 2.63e-11 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4734g00001 - - gmx:100783611 1265.37