Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4733g00003 ATGGCCACCACCACGGAGCAAGAGACCTCACGTGCTTCGCACATGCTTTATTATAGTACTGCCACGGACGACGACGTTAGCAGTAGCGAGCTGGACCCTGACAACGAAGAACACGAACAAGACAACGACGAGGTGTCCGCCGCAAGCGGCGCCGTGTGCGGCGGTTTACGGAGTCGGGGGTGGTCGCTGGGGCGGGTTCTGGACCCGAGAGCGAGCTGGGTCCAAGAATGGAACAGGGTGTTCCTGCTAGTGTGCGCCGCGGGGTTGTTTGTGGACCCACTCTTCTTCTACGCGCTCTCCGTTAACGAATCCTGCATGTGCCTCTTCGTAGACGGGTGGTTCGCCGTTACCGTAACGGTGCTCCGTTGCATGACGGACGCTTTGCACGTGTGGAACATGTTGCTGCGGCTCAAGATGGCACAGCGCTCCTTTGGTTTGGGTGGGGCTGCCTCCGTCACGGCGGATGGCTGTGGCTCCGCTGGGCTCAGAGACACGCGCCCACGCTCCGTTGCTCTTGGGTATCTTAAGTCCAGGACGGGCTTCTTCTTCGACTTCTTTGTTATTCTTCCTCTACCCCAGATTGTGCTTTGGGTGGCAATCCCCTCCATGTTGGAGAAAGGTTCAGTTTCGTTGGTGATGACAATGTTCTTAATTATGTTTCTATTCCAATACCTTCCCAAAATTTATCACTCTGTTTGTCATCTACGACGCACACAAAATCTCTCTGGATACATTTTTGGAACCGTTTGGTGGGGTATCGCCCTTAACATGATAGCGTATTTTGTGGCTTCCCATGCAGCAGGGGCATGTTGGTATTTGTTGGGGATCCAGAGGGCAGCCAAATGTCTCGTGGAGCAGTGTGGTAAAACAACTGGTTGTGGCATGAAAATGTTGTCTTGTCAAAAGCCTATATATTATGGACGCACTAGCTTATTGGTTAGCGACAAAGCAAGATTTGCATGGGCAGAGAACAGGGAAGCAAGGTCTACATGCTTAAATGGTCCTGAGAACTACAACTATGGGGCTTATAAATGGACTGTTCAACTTGTCACTAATGATAACCGGTTGGAAAAGATACTTTTCCCTATCTTTTGGGGCCTAATGACTCTCAGCACTTTCGGGAACCTAGAGAGCACAACGGAATGGCTAGAAGTAGTTTTCAACATCATTGTTTTGACCAGTGGCCTTCTTCTTGTCACTATGTTGATTGGAAACATTAAGGTGTTTTTGCATGCAACAACATCAAAGAAACAAGCAATGCAATTGAAGATGAGAAATATTGAATGGTGGATGAGGAAAAGGCGATTGCCCCAAGGGTTTCGGCAACGTGTACGTAACTATGAAAGACAACGTTGGGCTGCAATGCGTGGGGTTGATGAATGTGAGATTACTAGAAATCTCCCTGAGGGGCTAAGAAGAGACATCAAATACCATCTATGTTTAGATTTGGTGAGACAGGTGCCACTATTTCAACATATGGATGATCTGGTTCTAGAGAACATATGTGACCGGGTGAAGTCTTTGATATTCACAAAGGGAGAAACAATAGCAAGAGAAGGAGACCCAGTTCAAAGAATGCTATTTGTAGTAAGGGGTCACCTTCAAAGCAGCCAAGTCCTAAGGGATGGGGTGAAAAGTTGTTGCATGTTAGGTCCAGGAAACTTCAGTGGTGACGAGCTCCTTTCATGGTGTTTAAGGAGACCCTTCATAGAGCGCCTTCCACCATCTTCATCAACACTAACCACACTCGAAACCACAGAGGCATTTGGTCTTGAAGCTGAGGACGTTAAGTATGTGACACAACATTTTAGGTACACATTCGTGAAAGAAAAGGTGAAGAGAAGTGCTAGGTATTACTCACCAGGGTGGAGAACTTGGGGTGCTGTGGCCATTCAATTGGCATGGAGAAGGTACAAGCATAGGTTGACTTTGACTTCATTGTCCTTTATAAGGCCTAGGAGGCCTCTGTCACGATGCTCTTCCTTGGGAGAGGATAGGCTTCGTCTTTACACGGCTTTGTTAACCTCACCAAAGCCTAATCAGGATGATTTTGACTTTTAA 2061 0.4789 MATTTEQETSRASHMLYYSTATDDDVSSSELDPDNEEHEQDNDEVSAASGAVCGGLRSRGWSLGRVLDPRASWVQEWNRVFLLVCAAGLFVDPLFFYALSVNESCMCLFVDGWFAVTVTVLRCMTDALHVWNMLLRLKMAQRSFGLGGAASVTADGCGSAGLRDTRPRSVALGYLKSRTGFFFDFFVILPLPQIVLWVAIPSMLEKGSVSLVMTMFLIMFLFQYLPKIYHSVCHLRRTQNLSGYIFGTVWWGIALNMIAYFVASHAAGACWYLLGIQRAAKCLVEQCGKTTGCGMKMLSCQKPIYYGRTSLLVSDKARFAWAENREARSTCLNGPENYNYGAYKWTVQLVTNDNRLEKILFPIFWGLMTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRRLPQGFRQRVRNYERQRWAAMRGVDECEITRNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGETIAREGDPVQRMLFVVRGHLQSSQVLRDGVKSCCMLGPGNFSGDELLSWCLRRPFIERLPPSSSTLTTLETTEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWGAVAIQLAWRRYKHRLTLTSLSFIRPRRPLSRCSSLGEDRLRLYTALLTSPKPNQDDFDF 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4733g00003 686 FunFam cyclic nucleotide-gated ion channel 4 487 605 - -
Gabi4733g00003 686 ProSiteProfiles cAMP/cGMP binding motif profile. 489 599 IPR000595 -
Gabi4733g00003 686 MobiDBLite consensus disorder prediction 22 46 - -
Gabi4733g00003 686 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 48 646 - -
Gabi4733g00003 686 CDD CAP_ED 489 569 IPR000595 -
Gabi4733g00003 686 Gene3D Jelly Rolls 487 605 IPR014710 -
Gabi4733g00003 686 MobiDBLite consensus disorder prediction 27 41 - -
Gabi4733g00003 686 SUPERFAMILY Voltage-gated potassium channels 69 410 - -
Gabi4733g00003 686 Pfam Ion transport protein 77 406 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Gabi4733g00003 686 Pfam Cyclic nucleotide-binding domain 510 597 IPR000595 -
Gabi4733g00003 686 Gene3D Helix hairpin bin 414 480 - -
Gabi4733g00003 686 FunFam Cyclic nucleotide-gated ion channel 1 416 480 - -
Gabi4733g00003 686 SUPERFAMILY cAMP-binding domain-like 415 603 IPR018490 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4733g00003 Gabi-Chr4733 51591 78176 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4733g00003 50 685 Ion Channels AT5G54250 77.916 0.0 1028
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4733g00003 K05391 - gmx:100796761 1177.54