Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4726g00003 ATGTCTTCTTTCAAATCCTATGGGAAAGTTGATGAACATGAGCAAATGATGTTAGATGCTCGGAGGAAAACCCGAAAGAGAATCACAATCATAAGCTTGTCCTCAATAATCCTTGCTGGTGTTGTATTTGCTACGGTATTTGGAATTGTTAATAACTCTCGTGGCAACTCACAAAGTGGCAATAATGCTCAATCATTAACCAATTCTTTTAAGGCTGTTTGTGATGTGACCTTGTATAAGGACTCATGCTATCGCAGCCTTGGCTCTCTTTATCATTCAGGGCAAGTTCAGGTTCAGCCTGAGGAGTTGTTCAAGTTTTCAATCAAAGTGGCCTTAACTGAAGTGTCCAAAGCTGTTATTTTTTTCTCAGAGAATGGTGTTTTCAAAGGCTTGAATGATAGCAGGACTAAGGAAGCTTTGGAAAATTGCAGGGATCTTTTGGATCTTGCAGTTGATCACCTAAATAGCTCTTTGACTTCTGCGGAAAATTCTTCCCTTCTTGATGTTTTTGATGATCATGAAACATGGTTAAGTGCCGCAGGTACATACCAGCAAACTTGCATTGAAGGCTTTGAGGATGCAAAAGAAGCATTGAAAGAAAGTGTAGTAAGCTATCTTAAAAATTCTACACATTTCACTAGTAACAGTCTTGCAATCATTACATGGATCAACAAGGCCTCAAGCACACTGAACTTGAGGCGATTACTGAGTTTACCTTTCCAGAATGAAGCACCAGAATGGCTTCATTCAAAAGACAGGAAGTTACTTGGAACTAAGGATTTGAAAGGGAAAGTTGACATTGTTGTTGCCAAAGATGGCAGTGGGAAATATAAAACTATTTCAGCTGCACTTAAGCTTGTCCCTAACAAGAGTAACAAGAGGACTGTGATCTATGTGAAGAGAGGGGTTTACTATGAAAATGTGAGGGTAGAAAAGACCAAATGGAATGTGATGATCATTGGCGACGGAATGAATGCTACTATAGTATCTGGCAGCCGTAACTTTGTTGATGGCACACCAACATTTTCAACCGCAACATTTGCTGTGTTTGGGAGGAATTTCATAGCAAGAGATATGGGTTTTCGCAACACAGCTGGTCCAAAGAAACAACAAGCAGTGGCACTAATGACAAGTGCTGATCGAGCAGTTTACTATAGATGTCATATTGATGCATATCAGGACACTCTCTATGCTCATTCCAATCGCCAATTCTATAGAGAATGCAACATTTATGGGACAGTTGATTTCATTTTTGGAAATTCTGCAGTTATATTACAAAACTGCAATATTTTACCAAAGTTACCAATACTTGGTCAGCAGAACACAATCACAGCACAGGGAAAATTTGACCCTAACATGAACACTGGGATTTCAATTCAAAATTGCAACATTTCACCCTTTGGGAACTTGAGCTCTGTCCAAACATACCTTGGAAGACCCTGGAAGAATTACTCAACTACAGTATACATGAGATCAAGAATGGAAAGCTTTATTAACCCAAAAGGGTGGTTACCATGGGTGGGGAACTCAGCACCAGACACCCTTTTTTATGCAGAATTTCAGAATGTTGGAGAAGGTGCTATAACAAAGAATAGGGTGAAGTGGAAGGGTTTGAGAACCATTACTAGTAAAAAAGCTAGCATGTTTACAATCAAGGTTTTTCTTCAAGGAGATAGATGGATTCCTGCTTCAGGTGCCCCTTTTAAGTCTGATCTGTGA 1719 0.395 MSSFKSYGKVDEHEQMMLDARRKTRKRITIISLSSIILAGVVFATVFGIVNNSRGNSQSGNNAQSLTNSFKAVCDVTLYKDSCYRSLGSLYHSGQVQVQPEELFKFSIKVALTEVSKAVIFFSENGVFKGLNDSRTKEALENCRDLLDLAVDHLNSSLTSAENSSLLDVFDDHETWLSAAGTYQQTCIEGFEDAKEALKESVVSYLKNSTHFTSNSLAIITWINKASSTLNLRRLLSLPFQNEAPEWLHSKDRKLLGTKDLKGKVDIVVAKDGSGKYKTISAALKLVPNKSNKRTVIYVKRGVYYENVRVEKTKWNVMIIGDGMNATIVSGSRNFVDGTPTFSTATFAVFGRNFIARDMGFRNTAGPKKQQAVALMTSADRAVYYRCHIDAYQDTLYAHSNRQFYRECNIYGTVDFIFGNSAVILQNCNILPKLPILGQQNTITAQGKFDPNMNTGISIQNCNISPFGNLSSVQTYLGRPWKNYSTTVYMRSRMESFINPKGWLPWVGNSAPDTLFYAEFQNVGEGAITKNRVKWKGLRTITSKKASMFTIKVFLQGDRWIPASGAPFKSDL 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4726g00003 572 FunFam Pectinesterase 66 224 - -
Gabi4726g00003 572 SMART PMEI_2 65 219 IPR006501 GO:0004857
Gabi4726g00003 572 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 71 223 IPR035513 -
Gabi4726g00003 572 CDD PMEI-like_3 72 225 - -
Gabi4726g00003 572 ProSitePatterns Pectinesterase signature 2. 410 419 IPR033131 -
Gabi4726g00003 572 Gene3D - 262 572 IPR012334 -
Gabi4726g00003 572 SUPERFAMILY Pectin lyase-like 265 569 IPR011050 -
Gabi4726g00003 572 FunFam Pectinesterase 260 572 - -
Gabi4726g00003 572 PANTHER PECTINESTERASE 41 562 - -
Gabi4726g00003 572 Pfam Pectinesterase 266 558 IPR000070 GO:0030599|GO:0042545
Gabi4726g00003 572 Pfam Plant invertase/pectin methylesterase inhibitor 70 219 IPR006501 GO:0004857
Gabi4726g00003 572 NCBIfam pectinesterase inhibitor domain 41 223 IPR006501 GO:0004857
Gabi4726g00003 572 Gene3D Invertase/pectin methylesterase inhibitor family protein 68 224 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4726g00003 Gabi-Chr4726 80075 82957 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4726g00003 7 572 Carbohydrate Esterase AT3G10710 56.491 0.0 666
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4726g00003 - - gmx:100811152 935.636