Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4724g00083 ATGGTGAGGGGAAAAACTCAGATGAAGCGCATTGAAAATGAGACAAGCAGGCAAGTAACTTTTTCCAAGAGAAGAAATGGGTTGCTTAAGAAGGCCTTTGAGCTTTCAGTGTTGTGTGATGCTGAAGTCGCACTCATCATCTTCTCTCCCAGAGGGAAACTCTATGAGTTCTCCAGTTCTGGTATAAACAAAACAGTCGAACGCTATCAGAGGAAAGTCAAGGACCTGGATCGCAGCACCAAAGGAAAACAAGAAAATACACAGCATATGAAGGAAGGTGATATCAGCATAGCAACAAAGATCAAGCATCTAGAAATTTCTAAAAGGAAGCTTTTGGGAGATGAATTGGATACATGCGCACTTGACGAGTTACAACAGCTAGAGAACCAGATCGAACGCAGCTTAAACAAAATTAGAGCCAGAAAGAGTGAATTGTTCAAGGAGCGAATTGCGAAGCTAAGAGAAGAGGAAAAGTGCCTACTTGAGGAAAATAGACGCTTACGTGAGCAGTGTCGGATCGAACAAGAGCGGTCTATAAGTAAAGAAAAAGTCGAACAGGTCACAGAAAGAAGGGACGAAGAGGAGGTGGAGACGGAATTGTTCATAGGGCGACCTAAGAGAAGAGTGCCTTGA 633 0.4329 MVRGKTQMKRIENETSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSSGINKTVERYQRKVKDLDRSTKGKQENTQHMKEGDISIATKIKHLEISKRKLLGDELDTCALDELQQLENQIERSLNKIRARKSELFKERIAKLREEEKCLLEENRRLREQCRIEQERSISKEKVEQVTERRDEEEVETELFIGRPKRRVP 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4724g00083 210 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gabi4724g00083 210 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 169 - -
Gabi4724g00083 210 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gabi4724g00083 210 SUPERFAMILY SRF-like 3 73 IPR036879 GO:0003677|GO:0046983
Gabi4724g00083 210 Coils Coil 117 177 - -
Gabi4724g00083 210 Gene3D - 13 95 IPR036879 GO:0003677|GO:0046983
Gabi4724g00083 210 CDD MADS_MEF2_like 3 70 IPR033896 GO:0000977|GO:0045944
Gabi4724g00083 210 Pfam K-box region 84 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gabi4724g00083 210 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gabi4724g00083 210 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gabi4724g00083 210 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gabi4724g00083 210 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Gabi4724g00083 210 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Gabi4724g00083 210 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gabi4724g00083 210 Coils Coil 66 86 - -
Gabi4724g00083 210 FunFam Agamous-like MADS-box protein AGL13 13 79 - -
Gabi4724g00083 210 MobiDBLite consensus disorder prediction 188 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4724g00083 Gabi-Chr4724 950125 958682 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4724g00083 1 208 MADS-box Gene Family AT4G22950 56.872 6.31e-76 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gabi4724g00083 K-box 4.7e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4724g00083 - - gmx:100782713 287.73