Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4724g00079 ATGAGCATCCCATTGTATCGATCCAAAAACATAACCATGACTTCGATTCATCAATCTTGGAGCTTCTTGTTCATTACATTTACATGGATTTTCAAAATCATAGGAAGGCCAGCAGTGGCAGAGGGAATATTTCAACCAAGTCAATGGGCTCTTGCCCATGCCACATTTTATGGTGATGAGACTGCTTCTGCCACCATGGGAGGAGCATGTGGGTACGGAAATTTATTTATTAACGGCTATGGGACAGATACAGCGGCTTTGAGCTCTACATTGTTCAACAATGGGTATGCATGCGGGACATGTTATCAGATAAAATGCTTCCAATCGAGTGCATGCTACACCAATGTGCTAACAGTGACCGCCACAAATCTTTGTCCTCCTAATTGGGCCGAGGCCTCTGATAATGGTGGCTGGTGCAACCCACCTCGTACACATTTTGATATGTCCAAGCCTGCCTTCATGAAAATTGCACAATGGACGGCTGGCATCGTCCCTGTTATGTACCGCAGAGTACCGTGCGTAAGGCGTGGAGGGCTTCGATTCTCTTTGCAAGGAAATGGGTATTGGTTATTGGTGTATGTGATGAATGTGGGAGGTGGAGGAGATATTGCCAACATGTGGGTGAAAGGAAGTGAAACAGGGTGGATTAGCATGAGTCACAACTGGGGGGCTTCCTATCAGGCATTTGCAACACTAAGTGGCCAAGCTATTTCTTTCAAGATCACTTCCTACACAACCGCACAAACTATAATAGCATGGAATGTTGCCCCTGCCAACTGGGGCGTAGGACTAACTTATTCCACCAATGTCAACTTCTATTAA 822 0.4562 MSIPLYRSKNITMTSIHQSWSFLFITFTWIFKIIGRPAVAEGIFQPSQWALAHATFYGDETASATMGGACGYGNLFINGYGTDTAALSSTLFNNGYACGTCYQIKCFQSSACYTNVLTVTATNLCPPNWAEASDNGGWCNPPRTHFDMSKPAFMKIAQWTAGIVPVMYRRVPCVRRGGLRFSLQGNGYWLLVYVMNVGGGGDIANMWVKGSETGWISMSHNWGASYQAFATLSGQAISFKITSYTTAQTIIAWNVAPANWGVGLTYSTNVNFY 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4724g00079 273 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 188 268 IPR007117 -
Gabi4724g00079 273 PRINTS Expansin/Lol pI family signature 48 63 IPR007118 GO:0005576
Gabi4724g00079 273 PRINTS Expansin/Lol pI family signature 88 106 IPR007118 GO:0005576
Gabi4724g00079 273 PRINTS Expansin/Lol pI family signature 254 268 IPR007118 GO:0005576
Gabi4724g00079 273 PRINTS Expansin/Lol pI family signature 161 177 IPR007118 GO:0005576
Gabi4724g00079 273 PRINTS Expansin/Lol pI family signature 215 229 IPR007118 GO:0005576
Gabi4724g00079 273 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576
Gabi4724g00079 273 CDD DPBB_EXPA_N 48 173 - -
Gabi4724g00079 273 Pfam Lytic transglycolase 84 168 IPR009009 -
Gabi4724g00079 273 PANTHER EXPANSIN-A15 34 268 IPR002963 GO:0009664
Gabi4724g00079 273 SUPERFAMILY PHL pollen allergen 175 267 IPR036749 -
Gabi4724g00079 273 PRINTS Expansin signature 189 210 IPR002963 GO:0009664
Gabi4724g00079 273 PRINTS Expansin signature 153 166 IPR002963 GO:0009664
Gabi4724g00079 273 PRINTS Expansin signature 117 127 IPR002963 GO:0009664
Gabi4724g00079 273 PRINTS Expansin signature 177 189 IPR002963 GO:0009664
Gabi4724g00079 273 PRINTS Expansin signature 79 93 IPR002963 GO:0009664
Gabi4724g00079 273 PRINTS Expansin signature 136 153 IPR002963 GO:0009664
Gabi4724g00079 273 PRINTS Expansin signature 254 270 IPR002963 GO:0009664
Gabi4724g00079 273 Gene3D - 179 273 IPR036749 -
Gabi4724g00079 273 Pfam Expansin C-terminal domain 180 257 IPR007117 -
Gabi4724g00079 273 SUPERFAMILY Barwin-like endoglucanases 48 196 IPR036908 -
Gabi4724g00079 273 Gene3D - 36 173 IPR036908 -
Gabi4724g00079 273 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 67 178 IPR007112 -
Gabi4724g00079 273 SMART dpbb_1 84 168 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4724g00079 Gabi-Chr4724 918916 922490 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4724g00079 13 272 Expansin Gene Family AT1G12560 65.019 1.77e-123 351
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4724g00079 - - gmx:100781459 476.478