LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi4724g00069	ATGGGGAGGCAACCTTGTTGTGACAAACTTGGGGTGAAGAAAGGTCCATGGACTGCTGAAGAAGACAAGAAGCTCATAAAATTCATTCTCACCAATGGCCAGTGTTGTTGGCGTGCTGTGCCAAAGCTTGCTGGCCTTAAGCGTTGTGGCAAGAGTTGCAGGCTTCGTTGGACTAATTATCTTCGACCAGACTTAAAAAGAGGGCTCCTCACAGAAGCAGAGGAACAGCTTGTTATTGATCTCCATGCCCGTCTTGGAAACAGGTGGTCCAAGATTGCTGCCAGATTACCAGGAAGGACAGACAATGAGATTAAGAATCATTGGAATACCCATATCAAGAAAAAACTCCTTAAGATGGGTATTGATCCTGTTACTCATGAACCTCTCAATAAACAAGCTGCATCCCAGGATAGTTCATCCCCTACAGAGCATTTGCCACAACCTGGCAATAACCATAAGGTCAAGGAAACTGATGGAGTTCTCAACTCAGATGAGAATTCAAGCTCATCACTAGCTGAAAATTCTTCTGGGGAAGAATCCCTTTTGTTAGATAGCATTTGCAGTGATGACTCTCTAATGAATAGCATGTGGCTAGATGAAACTCCATTGGTGGAAGCATTATGGGACACCACACCTAAAGCAGAGAATCCTAATAATGACATGGGCTTGCTGCCATCTTGGGAGGATAATTGTGCTTGGCTATTGGACTGTCAGGACTTTGGTATTCATGATTTTGGGTTTAATTGTTTCAACGAGATTGAGACAAATTCACTGCAAACTATAGAAATGAAGGGAGAGAAGCATTAA	807	0.4312	MGRQPCCDKLGVKKGPWTAEEDKKLIKFILTNGQCCWRAVPKLAGLKRCGKSCRLRWTNYLRPDLKRGLLTEAEEQLVIDLHARLGNRWSKIAARLPGRTDNEIKNHWNTHIKKKLLKMGIDPVTHEPLNKQAASQDSSSPTEHLPQPGNNHKVKETDGVLNSDENSSSSLAENSSGEESLLLDSICSDDSLMNSMWLDETPLVEALWDTTPKAENPNNDMGLLPSWEDNCAWLLDCQDFGIHDFGFNCFNEIETNSLQTIEMKGEKH	268

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi4724g00069	268	Gene3D	-	71	148	-	-
	Gabi4724g00069	268	MobiDBLite	consensus disorder prediction	130	176	-	-
	Gabi4724g00069	268	FunFam	MYB transcription factor	70	146	-	-
	Gabi4724g00069	268	CDD	SANT	16	61	IPR001005	-
	Gabi4724g00069	268	MobiDBLite	consensus disorder prediction	130	147	-	-
	Gabi4724g00069	268	ProSiteProfiles	Myb-like domain profile.	62	112	IPR001005	-
	Gabi4724g00069	268	FunFam	MYB transcription factor	11	67	-	-
	Gabi4724g00069	268	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	9	61	IPR017930	-
	Gabi4724g00069	268	ProSiteProfiles	Myb-like domain profile.	9	61	IPR001005	-
	Gabi4724g00069	268	PANTHER	F14D16.11-RELATED	1	165	-	-
	Gabi4724g00069	268	CDD	SANT	71	112	IPR001005	-
	Gabi4724g00069	268	Pfam	Myb-like DNA-binding domain	71	111	IPR001005	-
	Gabi4724g00069	268	Pfam	Myb-like DNA-binding domain	14	61	IPR001005	-
	Gabi4724g00069	268	SUPERFAMILY	Homeodomain-like	11	108	IPR009057	-
	Gabi4724g00069	268	Gene3D	-	12	67	-	-
	Gabi4724g00069	268	SMART	sant	13	63	IPR001005	-
	Gabi4724g00069	268	SMART	sant	66	114	IPR001005	-
	Gabi4724g00069	268	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	62	116	IPR017930	-
	Gabi4724g00069	268	MobiDBLite	consensus disorder prediction	161	176	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi4724g00069	Gabi-Chr4724	843736	845420	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi4724g00069	1	247	MYB Transcription Factor Family	AT4G22680	60.150	2.24e-100	292

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Gabi4724g00069		Myb_DNA-binding	1.3e-13	CL0123